Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8thf
Q-score: 0.461
SARS-CoV-2 spike/nanobody mixture complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g70
Q-score: 0.358
Ye G, Bu F, Pan R, Wen W, Mendoza A, Spiller B, Du L, Perlman S, Liu B, Li F
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanosota-3 (15 kDa, Protein from Vicugna pacos)
- Nanosota-5 (15 kDa, Protein from Vicugna pacos)
- Nanosota-6 (15 kDa, Protein from Vicugna pacos)
- Sars-cov-2 spike/nanobody mixture complex (547 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-4 (16 kDa, Protein from Vicugna pacos)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Local refinement of SARS-CoV-2 spike/nanobody mixture complex around NTD
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g78
Q-score: 0.391
Ye G, Bu F, Pan R, Wen W, Mendoza A, Spiller B, Du L, Perlman S, Liu B, Li F
To Be Published
- Local refinement of sars-cov-2 spike/nanobody mixture complex (547 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanosota-5 (14 kDa, Protein from Vicugna pacos)
- Nanosota-6 (15 kDa, Protein from Vicugna pacos)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 (local refinement)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8g7a
Q-score: 0.293
Ye G, Bu F, Pan R, Wen W, Mendoza A, Spiller B, Du L, Perlman S, Liu B, Li F
To Be Published
- Sars-cov-2 spike/nb3 complex with 2 rbds up and 3 nb3 (455 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-3 (14 kDa, Protein from Vicugna pacos)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3 (local refinement)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8g7b
Q-score: 0.33
Ye G, Bu F, Pan R, Wen W, Mendoza A, Spiller B, Du L, Perlman S, Liu B, Li F
To Be Published
- Nanosota-3 (15 kDa, Protein from Vicugna pacos)
- Sars-cov-2 spike/nb3 complex with 1 rbd up and 2 nb3 (455 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
local refinement of SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8g7c
Q-score: 0.231
Ye G, Bu F, Pan R, Wen W, Mendoza A, Spiller B, Du L, Perlman S, Liu B, Li F
To Be Published
- Nanosota-4 (16 kDa, Protein from Vicugna pacos)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike/nb4 complex with 2 rbds up and 3 nb4 (459 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 bound at 2.5 A
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8g73
Q-score: 0.367
Ye G, Pan R, Bu F, Zheng J, Mendoza A, Wen W, Du L, Spiller B, Wadzinski BE, Liu B, Perlman S, Li F
J Virol (2023) 97 pp. e0144823-e0144823 [ Pubmed: 37855638 DOI: doi:10.1128/jvi.01448-23 ]
- Nanosota-3 (15 kDa, Protein from Vicugna pacos)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike/nb3 complex with 2 rbds up and 3 nb3 bound (455 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8g74
Q-score: 0.392
Ye G, Pan R, Bu F, Zheng J, Mendoza A, Wen W, Du L, Spiller B, Wadzinski BE, Liu B, Perlman S, Li F
J Virol (2023) 97 pp. e0144823-e0144823 [ Pubmed: 37855638 DOI: doi:10.1128/jvi.01448-23 ]
- Sars-cov-2 spike/nb3 complex with 1 rbd up and 2 nb3 (455 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanosota-3 (14 kDa, Protein from Vicugna pacos)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)