Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9co6
Q-score: 0.402
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Nanosota-9 (Complex from Vicugna pacos)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ba.5 spike/nanosota-9 complex (Complex)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Ba.5 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Local refinement of BA.5 spike/Nanosota-9 complex
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 9co7
Q-score: 0.44
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (Complex from Vicugna pacos)
- Ba.5 spike/nanosota-9 complex (Complex)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Ba.5 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9co8
Q-score: 0.402
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (Complex from Vicugna pacos)
- Jn.1 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Jn.1 spike/nanosota-9 complex (Complex)
Local refinement of JN.1 spike/Nanosota-9 complex
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 9co9
Q-score: 0.438
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Spike glycoprotein (138 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (Complex from Vicugna pacos)
- Jn.1 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Jn.1 spike/nanosota-9 complex (Complex)
SARS-CoV-2 spike/nanobody mixture complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g70
Q-score: 0.358
Ye G, Bu F, Pan R, Wen W, Mendoza A, Spiller B, Du L, Perlman S, Liu B, Li F
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanosota-6 (15 kDa, Protein from Vicugna pacos)
- Nanosota-4 (16 kDa, Protein from Vicugna pacos)
- Nanosota-3 (15 kDa, Protein from Vicugna pacos)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-5 (15 kDa, Protein from Vicugna pacos)
- Sars-cov-2 spike/nanobody mixture complex (547 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
Local refinement of SARS-CoV-2 spike/nanobody mixture complex around NTD
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g78
Q-score: 0.391
Ye G, Bu F, Pan R, Wen W, Mendoza A, Spiller B, Du L, Perlman S, Liu B, Li F
To Be Published
- Nanosota-5 (14 kDa, Protein from Vicugna pacos)
- Nanosota-6 (15 kDa, Protein from Vicugna pacos)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Local refinement of sars-cov-2 spike/nanobody mixture complex (547 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Local refinement of SARS-CoV-2 spike/nanobody mixture complex around RBD
Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 8g79
Q-score: 0.099
Ye G, Bu F, Pan R, Wen W, Mendoza A, Spiller B, Du L, Perlman S, Liu B, Li F
To Be Published
- Local refinement of sars-cov-2 spike/nanobody mixture complex (547 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-3 (14 kDa, Protein from Vicugna pacos)
- Nanosota-4 (16 kDa, Protein from Vicugna pacos)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 (local refinement)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8g7a
Q-score: 0.293
Ye G, Bu F, Pan R, Wen W, Mendoza A, Spiller B, Du L, Perlman S, Liu B, Li F
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanosota-3 (14 kDa, Protein from Vicugna pacos)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike/nb3 complex with 2 rbds up and 3 nb3 (455 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3 (local refinement)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8g7b
Q-score: 0.33
Ye G, Bu F, Pan R, Wen W, Mendoza A, Spiller B, Du L, Perlman S, Liu B, Li F
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike/nb3 complex with 1 rbd up and 2 nb3 (455 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-3 (15 kDa, Protein from Vicugna pacos)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
local refinement of SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8g7c
Q-score: 0.231
Ye G, Bu F, Pan R, Wen W, Mendoza A, Spiller B, Du L, Perlman S, Liu B, Li F
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanosota-4 (16 kDa, Protein from Vicugna pacos)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike/nb4 complex with 2 rbds up and 3 nb4 (459 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)