Single particle cryo-EM dataset for E. coli MlaFEDB bound to MlaC
MacRae MR, Puvanendran D, Haase MAB, Coudray N, Kolich L, Lam C, Baek M, Bhabha G, Ekiert DC
J Biol Chem (2023) [ DOI: 10.1016/j.jbc.2023.104744 Pubmed: 37100290 ]
Image sets:
- Unaligned frames of MlaFEDB & MlaC complex (untilted dataset)
- Aligned frames of MlaFEDB & MlaC complex (untilted dataset)
- unaligned frames of MlaFEDB & MlaC complex (tilted dataset)
- Aligned frames of MlaFEDB & MlaC complex (tilted dataset)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7mi3
Q-score: 0.441
Santarossa CC, Mickolajczyk KJ, Steinman JB, Urnavicius L, Chen N, Hirata Y, Fukase Y, Coudray N, Ekiert DC, Bhabha G, Kapoor TM
Cell Chem Biol (2021) 28 pp. 1460-1473.e15 [ Pubmed: 34015309 DOI: doi:10.1016/j.chembiol.2021.04.024 ]
- Dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound (300 kDa, Complex from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Fusion protein of dynein and endolysin (304 kDa, Protein from Saccharomyces cerevisiae)
- (8s)-6-(3-bromophenoxy)-2-[1-(4-chlorophenyl)cyclopropyl]-7-hydroxypyrazolo[1,5-a]pyrimidine-3-carbonitrile (481 Da, Ligand)
Yeast dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound, Map 1
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7mi6
Q-score: 0.339
Santarossa CC, Mickolajczyk KJ, Steinman JB, Urnavicius L, Chen N, Hirata Y, Fukase Y, Coudray N, Ekiert DC, Bhabha G, Kapoor TM
Cell Chem Biol (2021) 28 pp. 1460-1473.e15 [ Pubmed: 34015309 DOI: doi:10.1016/j.chembiol.2021.04.024 ]
- Dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound (300 kDa, Complex from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Fusion protein of dynein and endolysin (304 kDa, Protein from Saccharomyces cerevisiae)
- (8s)-6-(3-bromophenoxy)-2-[1-(4-chlorophenyl)cyclopropyl]-7-hydroxypyrazolo[1,5-a]pyrimidine-3-carbonitrile (481 Da, Ligand)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7mi8
Q-score: 0.427
Santarossa CC, Mickolajczyk KJ, Steinman JB, Urnavicius L, Chen N, Hirata Y, Fukase Y, Coudray N, Ekiert DC, Bhabha G, Kapoor TM
Cell Chem Biol (2021) 28 pp. 1460-1473.e15 [ Pubmed: 34015309 DOI: doi:10.1016/j.chembiol.2021.04.024 ]
Santarossa CC, Mickolajczyk KJ, Steinman JB, Urnavicius L, Chen N, Hirata Y, Fukase Y, Coudray N, Ekiert DC, Bhabha G, Kapoor TM
Cell Chem Biol (2021) 28 pp. 1460-1473.e15 [ Pubmed: 34015309 DOI: doi:10.1016/j.chembiol.2021.04.024 ]
Santarossa CC, Mickolajczyk KJ, Steinman JB, Urnavicius L, Chen N, Hirata Y, Fukase Y, Coudray N, Ekiert DC, Bhabha G, Kapoor TM
Cell Chem Biol (2021) 28 pp. 1460-1473.e15 [ Pubmed: 34015309 DOI: doi:10.1016/j.chembiol.2021.04.024 ]
Single particle cryo-EM dataset for MlaFEDB from E. coli in nanodisc
Coudray N, Isom GL, MacRae M, Saiduddin MN, Bhabha G, Ekiert DC
eLife (2020) 9 [ DOI: 10.7554/elife.62518 Pubmed: 33236984 ]
Image sets:
Cryo-EM structure of MlaFEDB in nanodiscs with phospholipid substrates
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 6xbd
Q-score: 0.489
Coudray N, Isom GL, MacRae MR, Saiduddin MN, Bhabha G, Ekiert DC
eLife (2020) 9 [ DOI: doi:10.7554/eLife.62518 Pubmed: 33236984 ]
- Phospholipid abc transporter-binding protein mlad (21 kDa, Protein from Escherichia coli DEC6A)
- Mlafedb complex with two bound phospholipid substrates in msp1d1 nanodisc (266 kDa, Complex from Escherichia coli K-12)
- Msp1d1 (13 kDa, Protein from Homo sapiens)
- Di-palmitoyl-3-sn-phosphatidylethanolamine (691 Da, Ligand)
- Phospholipid abc transporter permease protein mlae (27 kDa, Protein from Escherichia coli DEC6A)
- Phospholipid abc transporter-binding protein mlab (10 kDa, Protein from Escherichia coli K-12)
- Phospholipid transport system atp-binding protein mlaf (29 kDa, Protein from Escherichia coli DEC6A)
Single particle cryo-EM dataset for LetB from E.coli
Isom GL, Coudray N, MacRae MR, McManus CT, Ekiert DC, Bhabha G
Cell (2020) 181 pp. 653-664.e19 [ Pubmed: 32359438 DOI: 10.1016/j.cell.2020.03.030 ]
Image sets:
- Aligned, dose-weighted and non-dose-weighted micrographs
- Particle stacks for Model 6 (EMD-20998)
- Particle stacks for Model 1 (EMD-20993)
- Particle stacks for Model 2 (EMD-20994)
- Particle stacks for Model 5 (EMD-20997)
- Particle stacks for Model 7 (EMD-20999)
- Particle stacks for Model 4 (EMD-20996)
- Particle stacks for Model 8 (EMD-21000)
- Particle stacks for Model 3 (EMD-20995)