Cryo-EM structure of uropathogenic Escherichia coli CysK:CdiA:tRNA complex B
To Be Published
- Trnailegau (25 kDa, RNA from Escherichia coli)
- Cysteine synthase a (34 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Cysk in complex with cdia-ct and trna. (110 kDa, Complex from Escherichia coli 536)
- Trna nuclease cdia (25 kDa, Protein from Escherichia coli 536)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8k60
Q-score: 0.447
Shi J, Ye Z, Feng Z, Wen A, Wang L, Zhang Z, Xu L, Song Q, Wang F, Liu T, Wang S, Feng Y, Lin W
iScience (2024) 27 pp. 110421-110421 [ Pubmed: 39108719 DOI: doi:10.1016/j.isci.2024.110421 ]
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Template strand dna for afss promoter (18 kDa, DNA from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Streptomyces coelicolor transcription initiation complex with the global transcription factor afsr (Complex from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Magnesium ion (24 Da, Ligand)
- Regulatory protein afsr (105 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Non-template strand dna for afss promoter (18 kDa, DNA from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Rna polymerase principal sigma factor hrdb (56 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Dna-directed rna polymerase subunit beta' (144 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
nhTMEM16 R432A mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 8tpo
Q-score: 0.467
Feng Z, Alvarenga OE, Accardi A
Nat Struct Mol Biol (2024) 31 pp. 1468-1481 [ Pubmed: 38684930 DOI: doi:10.1038/s41594-024-01284-9 ]
- (1r)-2-{[(s)-{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9z)-octadec-9-enoate (749 Da, Ligand)
- Lipid scramblase nhtmem16 (83 kDa, Protein from Fusarium vanettenii)
- Calcium ion (40 Da, Ligand)
- Dimeric lipid scramblase nhtmem16 (Complex from Fusarium vanettenii)
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 8tok
Q-score: 0.475
Feng Z, Alvarenga OE, Accardi A
Nat Struct Mol Biol (2024) 31 pp. 1468-1481 [ DOI: doi:10.1038/s41594-024-01284-9 Pubmed: 38684930 ]
- Calcium ion (40 Da, Ligand)
- Dimeric lipid scramblase nhtmem16 (Complex from Fusarium vanettenii 77-13-4)
- Lipid scramblase nhtmem16 (83 kDa, Protein from Fusarium vanettenii 77-13-4)
nhTMEM16 R432A mutant in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 8tpp
Q-score: 0.476
Feng Z, Alvarenga OE, Accardi A
Nat Struct Mol Biol (2024) 31 pp. 1468-1481 [ Pubmed: 38684930 DOI: doi:10.1038/s41594-024-01284-9 ]
- Dimeric lipid scramblase nhtmem16 (Complex from Fusarium vanettenii 77-13-4)
- Calcium ion (40 Da, Ligand)
- Lipid scramblase nhtmem16 (83 kDa, Protein from Fusarium vanettenii 77-13-4)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8tpq
Q-score: 0.495
Feng Z, Alvarenga OE, Accardi A
Nat Struct Mol Biol (2024) 31 pp. 1468-1481 [ Pubmed: 38684930 DOI: doi:10.1038/s41594-024-01284-9 ]
- Dimeric lipid scramblase nhtmem16 (Complex from Fusarium vanettenii 77-13-4)
- (1r)-2-{[(s)-{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9z)-octadec-9-enoate (749 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Lipid scramblase nhtmem16 (83 kDa, Protein from Fusarium vanettenii 77-13-4)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 8tpt
Q-score: 0.525
Feng Z, Alvarenga OE, Accardi A
Nat Struct Mol Biol (2024) 31 pp. 1468-1481 [ DOI: doi:10.1038/s41594-024-01284-9 Pubmed: 38684930 ]
- Calcium ion (40 Da, Ligand)
- Dimeric lipid scramblase nhtmem16 (Complex from Fusarium vanettenii 77-13-4)
- Lipid scramblase nhtmem16 (83 kDa, Protein from Fusarium vanettenii 77-13-4)
- (1r)-2-{[(s)-{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9z)-octadec-9-enoate (749 Da, Ligand)
Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in the apo-form
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8j58
Q-score: 0.489
Mycobacterium tuberculosis ATP synthase Peripheral Stalk in the apo-form
Mycobacterium tuberculosis ATP synthase Peripheral Stalk in complex with bedaquiline(BDQ)