Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8k60
Q-score: 0.447
Shi J, Ye Z, Feng Z, Wen A, Wang L, Zhang Z, Xu L, Song Q, Wang F, Liu T, Wang S, Feng Y, Lin W
iScience (2024) 27 pp. 110421-110421 [ DOI: doi:10.1016/j.isci.2024.110421 Pubmed: 39108719 ]
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Regulatory protein afsr (105 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Zinc ion (65 Da, Ligand)
- Non-template strand dna for afss promoter (18 kDa, DNA from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Rna polymerase principal sigma factor hrdb (56 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Template strand dna for afss promoter (18 kDa, DNA from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Streptomyces coelicolor transcription initiation complex with the global transcription factor afsr (Complex from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
- Dna-directed rna polymerase subunit beta' (144 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 8hih
Q-score: 0.202
Shi J, Feng Z, Xu J, Li F, Zhang Y, Wen A, Wang F, Song Q, Wang L, Cui H, Tong S, Chen P, Zhu Y, Zhao G, Wang S, Feng Y, Lin W
PNAS (2023) 120 pp. e2300282120-e2300282120 [ DOI: doi:10.1073/pnas.2300282120 Pubmed: 37216560 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit beta (130 kDa, Protein from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit beta' (146 kDa, Protein from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Template strand dna of amtb promoter (33 kDa, DNA from Mycobacterium tuberculosis)
- Rna polymerase sigma factor siga (57 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Transcriptional regulatory protein (27 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Magnesium ion (24 Da, Ligand)
- Non-template strand dna of amtb promoter (33 kDa, DNA from Mycobacterium tuberculosis)
- Mycobacterium tuberculosis transcription initiation complex with transcription factor glnr (Complex from Mycobacterium tuberculosis)
Cryo-EM structure of SoxS-dependent transcription activation complex with zwf promoter DNA
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7w5x
Q-score: 0.47
Shi J, Wang L, Wen A, Wang F, Zhang Y, Yu L, Li F, Jin Y, Feng Z, Li J, Yang Y, Gao F, Zhang Y, Feng Y, Wang S, Zhao W, Lin W
Nucleic Acids Res (2022) 50 pp. 11359-11373 [ Pubmed: 36243985 DOI: doi:10.1093/nar/gkac898 ]
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli K-12)
- Dna (Complex)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- Regulatory protein soxs (12 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli K-12)
- Zwf promoter dna reverse strand (23 kDa, DNA from Escherichia coli)
- Soxs-dependent transcription activation complex with zwf promoter dna (Complex from Escherichia coli K-12)
- Dna-directed rna polymerase subunits (Complex from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- Zwf promoter dna forward strand (23 kDa, DNA from Escherichia coli)