IF(heme/confined) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-4)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 7zdf
Q-score: 0.589
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- {3,3'-[(9s)-8,13-diethenyl-3,7,12,17-tetramethyl-9,10-dihydroporphyrin-2,18-diyl-kappa~4~n~21~,n~22~,n~23~,n~24~]dipropanoato(2-)}iron (618 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(heme/confined) conformation of CydDC (Dataset-5)
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 7zdg
Q-score: 0.607
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Heme b/c (618 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
IF(heme/confined) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-14)
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Cydc (Protein from Escherichia coli K-12)
- Cydd (Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
Occ(apo/return) conformation of CydDC mutant (E500Q.C) in ATP(CydC) bound state (Dataset-18)
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 7zdt
Q-score: 0.622
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 7zdu
Q-score: 0.577
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 7ze5
Q-score: 0.587
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)