Cryo-EM structure of Light-harvesting complex from Spinacia oleracea
Resolution: 2.17 Å
EM Method: Single-particle
Fitted PDBs: 8y15
Q-score: 0.709
Seki S, Miyata T, Norioka N, Tanaka H, Kurisu G, Namba K, Fujii R
Pnas Nexus (2024) 3 pp. pgae405-pgae405 [ Pubmed: 39346626 DOI: doi:10.1093/pnasnexus/pgae405 ]
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Water (18 Da, Ligand)
- Light-harvesting complex ii from spinacia oleracea (700 kDa, Complex from Spinacia oleracea)
- Chlorophyll b (907 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Lutein (568 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Cryo-EM structure of in vitro reconstituted Light-harvesting complex II trimer
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 8yee
Q-score: 0.678
Seki S, Miyata T, Norioka N, Tanaka H, Kurisu G, Namba K, Fujii R
Pnas Nexus (2024) 3 pp. pgae405-pgae405 [ Pubmed: 39346626 DOI: doi:10.1093/pnasnexus/pgae405 ]
- Chlorophyll b (907 Da, Ligand)
- Water (18 Da, Ligand)
- In vitro reconstituted light-harvesting complex ii (120 kDa, Complex from Spinacia oleracea)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Lutein (568 Da, Ligand)
Cryo-EM structure of light-harvesting complex II with C1 symmetry
Seki S, Miyata T, Norioka N, Tanaka H, Kurisu G, Namba K, Fujii R
Pnas Nexus (2024) 3 pp. pgae405-pgae405 [ Pubmed: 39346626 DOI: doi:10.1093/pnasnexus/pgae405 ]
- Light-harvesting complex ii (120 kDa, Complex from Spinacia oleracea)
Cryo-EM structure of in vitro reconstituted LHCII with C1 symmetry
The Cryo-EM structure of siphonaxanthin chlorophyll a/b type light-harvesting complex II
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7wlm
Q-score: 0.649
Seki S, Nakaniwa T, Castro-Hartmann P, Sader K, Kawamoto A, Tanaka H, Qian P, Kurisu G, Fujii R
Bba Adv (2022) 2 pp. 100064-100064 [ Pubmed: 37082593 DOI: doi:10.1016/j.bbadva.2022.100064 ]
- Siphonaxanthin chlorophyll a/b binding light-harvesting complex ii (24 kDa, Protein from Codium fragile)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Water (18 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Siphonein (781 Da, Ligand)
- Siphonaxanthin (600 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Siphonaxanthin chlorophyll a/b-type light-harvesting complex ii (119 kDa, Complex from Codium fragile)