Cryo-EM structure of a human ATP11C-CDC50A flippase in E1-AMPPCP state
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7bsp
Q-score: 0.477
Nakanishi H, Nishizawa T, Segawa K, Nureki O, Fujiyoshi Y, Nagata S, Abe K
Cell Rep (2020) 32 pp. 108208-108208 [ Pubmed: 32997992 DOI: doi:10.1016/j.celrep.2020.108208 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cdc50a (40 kDa, Protein from Homo sapiens)
- Atp11c (124 kDa, Protein from Homo sapiens)
- Human atp11c-cdc50a flippase (180 kDa, Complex from Homo sapiens)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
Cryo-EM structure of a human ATP11C-CDC50A flippase in E1AlF-ADP state
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7bsq
Q-score: 0.567
Nakanishi H, Nishizawa T, Segawa K, Nureki O, Fujiyoshi Y, Nagata S, Abe K
Cell Rep (2020) 32 pp. 108208-108208 [ Pubmed: 32997992 DOI: doi:10.1016/j.celrep.2020.108208 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cdc50a (40 kDa, Protein from Homo sapiens)
- Atp11c (124 kDa, Protein from Homo sapiens)
- Human atp11c-cdc50a flippase (180 kDa, Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Tetrafluoroaluminate ion (102 Da, Ligand)
Cryo-EM structure of a human ATP11C-CDC50A flippase in E1AlF state
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7bss
Q-score: 0.539
Nakanishi H, Nishizawa T, Segawa K, Nureki O, Fujiyoshi Y, Nagata S, Abe K
Cell Rep (2020) 32 pp. 108208-108208 [ Pubmed: 32997992 DOI: doi:10.1016/j.celrep.2020.108208 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cdc50a (40 kDa, Protein from Homo sapiens)
- Alpha-d-mannopyranose (180 Da, Ligand)
- Atp11c (124 kDa, Protein from Homo sapiens)
- Human atp11c-cdc50a flippase (180 kDa, Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Tetrafluoroaluminate ion (102 Da, Ligand)
Cryo-EM structure of a human ATP11C-CDC50A flippase in PtdSer-bound E2BeF state
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7bsu
Q-score: 0.572
Nakanishi H, Nishizawa T, Segawa K, Nureki O, Fujiyoshi Y, Nagata S, Abe K
Cell Rep (2020) 32 pp. 108208-108208 [ Pubmed: 32997992 DOI: doi:10.1016/j.celrep.2020.108208 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Human atp11c-cdc50a flippase (180 kDa, Complex from Homo sapiens)
- Cell cycle control protein 50a (40 kDa, Protein from Homo sapiens)
- Atp11c (124 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 1-deoxy-alpha-d-mannopyranose (164 Da, Ligand)
Cryo-EM structure of a human ATP11C-CDC50A flippase in PtdSer-occluded E2-AlF state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7bsv
Q-score: 0.585
Nakanishi H, Nishizawa T, Segawa K, Nureki O, Fujiyoshi Y, Nagata S, Abe K
Cell Rep (2020) 32 pp. 108208-108208 [ Pubmed: 32997992 DOI: doi:10.1016/j.celrep.2020.108208 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cdc50a (40 kDa, Protein from Homo sapiens)
- Atp11c (124 kDa, Protein from Homo sapiens)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Human atp11c-cdc50a flippase (180 kDa, Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Tetrafluoroaluminate ion (102 Da, Ligand)
Cryo-EM structure of a human ATP11C-CDC50A flippase in PtdEtn-occluded E2-AlF state
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7bsw
Q-score: 0.475
Nakanishi H, Nishizawa T, Segawa K, Nureki O, Fujiyoshi Y, Nagata S, Abe K
Cell Rep (2020) 32 pp. 108208-108208 [ Pubmed: 32997992 DOI: doi:10.1016/j.celrep.2020.108208 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cdc50a (40 kDa, Protein from Homo sapiens)
- Alpha-d-mannopyranose (180 Da, Ligand)
- Atp11c (124 kDa, Protein from Homo sapiens)
- Human atp11c-cdc50a flippase (180 kDa, Complex from Homo sapiens)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (749 Da, Ligand)
- Tetrafluoroaluminate ion (102 Da, Ligand)
PIG GASTRIC H+/K+ - ATPASE IN COMPLEX WITH BYK99
Resolution: 6.5 Å
EM Method: Electron Crystallography
Fitted PDBs: 5y0b
Q-score: 0.115
Abe K, Shimokawa J, Naito M, Munson K, Vagin O, Sachs G, Suzuki H, Tani K, Fujiyoshi Y
Sci Rep (2017) 7 pp. 6632-6632 [ DOI: doi:10.1038/s41598-017-06698-8 Pubmed: 28747707 ]
Cryo-EM structure of antagonist-bound E2P gastric H+,K+-ATPase (SCH.E2.AlF)
Resolution: 8.0 Å
EM Method: Electron Crystallography
Fitted PDBs: 4ux1
Q-score: 0.106
J Biol Chem (2014) 289 pp. 30590-30601 [ Pubmed: 25231997 DOI: doi:10.1074/jbc.M114.584623 ]
- Potassium-transporting atpase (Sample)
- H+,k+-atpase (110 kDa, Protein from Sus scrofa)
Cryo-EM structure of antagonist-bound E2P gastric H+,K+-ATPase (SCH.E2.MgF)
Resolution: 7.0 Å
EM Method: Electron Crystallography
Fitted PDBs: 4ux2
Q-score: 0.111
J Biol Chem (2014) 289 pp. 30590-30601 [ Pubmed: 25231997 DOI: doi:10.1074/jbc.M114.584623 ]
- Potassium-transporting atpase (Sample)
- Hk-atpase (110 kDa, Protein from Sus scrofa)
Electron crystallographic studies on IP39 of Euglena gracilis
Suzuki H, Ito Y, Yamazaki Y, Mineta K, Uji M, Abe K, Tani K, Fujiyoshi Y, Tsukita S
Nat Commun (2013) 4 pp. 1766-1766 [ Pubmed: 23612307 DOI: doi:10.1038/ncomms2731 ]
- Alpha-type ip39 (39 kDa, Protein from Euglena gracilis)
- Euglena ip39 (39 kDa, Sample)