Single particle cryo-EM of H. thermophilus chaperonin complex
Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S
Structure (London, England : 1993) (2024) [ DOI: 10.1016/j.str.2024.02.012 Pubmed: 38492570 ]
Image sets:
Single particle cryo-EM of H. thermoluteolus chaperonin complex
Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S
Structure (London, England : 1993) (2024) [ DOI: 10.1016/j.str.2024.02.012 Pubmed: 38492570 ]
Image sets:
Cryo-EM structure of native H. thermoluteolus TH-1 GroEL
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8wu4
Q-score: 0.44
Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S
Structure (2024) 32 pp. 679-689.e4 [ Pubmed: 38492570 DOI: doi:10.1016/j.str.2024.02.012 ]
- Chaperonin groel (55 kDa, Protein from Hydrogenophilus thermoluteolus)
- Native h. thermoluteolus groel (809 MDa, Complex from Hydrogenophilus thermoluteolus)
Cryo-EM structure of H. thermoluteolus GroEL-GroES2 football complex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8wuc
Q-score: 0.554
Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S
Structure (2024) 32 pp. 679-689.e4 [ Pubmed: 38492570 DOI: doi:10.1016/j.str.2024.02.012 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chaperonin groel (56 kDa, Protein from Hydrogenophilus thermoluteolus)
- H. thermoluteolus groel-groes2 football complex bound with adp-mg2+ (73 MDa, Complex from Hydrogenophilus thermoluteolus)
- H. thermoluteolus groes (Complex)
- Co-chaperonin groes (10 kDa, Protein from Hydrogenophilus thermoluteolus)
- H. thermoluteolus groel (Complex)
Cryo-EM structure of H. thermophilus GroEL-GroES2 asymmetric football complex
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8wuw
Q-score: 0.444
Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S
Structure (2024) 32 pp. 679-689.e4 [ Pubmed: 38492570 DOI: doi:10.1016/j.str.2024.02.012 ]
- Co-chaperonin groes (Complex)
- H. thermophilus groel-groes2 asymmetric football complex (Complex from Hydrogenobacter thermophilus TK-6)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Co-chaperonin groes (10 kDa, Protein from Hydrogenobacter thermophilus TK-6)
- Chaperonin groel (56 kDa, Protein from Hydrogenobacter thermophilus TK-6)
- Chaperonin groel (Complex)
Cryo-EM structure of H. thermophilus GroEL-GroES bullet complex
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8wux
Q-score: 0.453
Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S
Structure (2024) 32 pp. 679-689.e4 [ Pubmed: 38492570 DOI: doi:10.1016/j.str.2024.02.012 ]
- Co-chaperonin groes (10 kDa, Protein from Hydrogenobacter thermophilus TK-6)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- H. thermophilus groel-groes bullet complex (Complex from Hydrogenobacter thermophilus TK-6)
- Potassium ion (39 Da, Ligand)
- Co-chaperonin groes (Complex)
- Chaperonin groel (Complex)
- Chaperonin groel (56 kDa, Protein from Hydrogenobacter thermophilus TK-6)
2.05 angstrom resolution structure determination of sulfur oxygenase reductase using 200kV cryo-EM
Sato Y, Yabuki T, Adachi N, Moriya T, Arakawa T, Kawasaki M, Yamada C, Senda T, Fushinobu S, Wakagi T
J Struct Biol X (2020) 4 [ DOI: 10.1016/j.yjsbx.2020.100030 Pubmed: 32775998 ]
Image sets:
Cryo-EM structure of sulfur oxygenase reductase from Sulfurisphaera tokodaii
Resolution: 2.24 Å
EM Method: Single-particle
Fitted PDBs: 6m3x
Q-score: 0.725
Sato Y, Yabuki T, Adachi N, Moriya T, Arakawa T, Kawasaki M, Yamada C, Senda T, Fushinobu S, Wakagi T
J Struct Biol X (2020) 4 pp. 100030-100030 [ Pubmed: 32775998 DOI: doi:10.1016/j.yjsbx.2020.100030 ]
- Water (18 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Sulfur oxygenase/reductase (35 kDa, Protein from Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7))
- Sulfur oxygenase reductase from sulfurisphaera tokodaii (857 kDa, Cellular component from Sulfurisphaera tokodaii)