Mediator-PIC Early (Tail A + Upstream DNA Activator)
Resolution: 7.7 Å
EM Method: Single-particle
Fitted PDBs: 7uik
Q-score: 0.091
Gorbea Colon JJ, Palao 3rd L, Chen SF, Kim HJ, Snyder L, Chang YW, Tsai KL, Murakami K
Mol Cell (2023) 83 pp. 574- [ Pubmed: 36731470 DOI: doi:10.1016/j.molcel.2023.01.011 ]
- Mediator of rna polymerase ii transcription subunit 3 (43 kDa, Protein from Saccharomyces cerevisiae S288C)
- Mediator of rna polymerase ii transcription subunit 5 (128 kDa, Protein from Saccharomyces cerevisiae S288C)
- Mediator of rna polymerase ii transcription subunit 15 (120 kDa, Protein from Saccharomyces cerevisiae S288C)
- Mediator of rna polymerase ii transcription subunit 16 (111 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Med-picearly (taila+activator & dna class 1) (Complex from Saccharomyces cerevisiae)
- Dna (37-mer) (11 kDa, DNA from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 14 (27 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (38-mer) (11 kDa, DNA from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 2 (47 kDa, Protein from Saccharomyces cerevisiae S288C)
- Regulatory protein gal4 (16 kDa, Protein from Saccharomyces cerevisiae S288C)
General transcription factor TFIIH (weak binding)
Resolution: 7.6 Å
EM Method: Single-particle
Fitted PDBs: 7ml3
Q-score: 0.215
Yang C, Fujiwara R, Kim HJ, Basnet P, Zhu Y, Gorbea Colon JJ, Steimle S, Garcia BA, Kaplan CD, Murakami K
Mol Cell (2022) 82 pp. 660-676.e9 [ Pubmed: 35051353 DOI: doi:10.1016/j.molcel.2021.12.020 ]
- Bj4_g0050160.mrna.1.cds.1 (38 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- General transcription and dna repair factor iih helicase subunit xpd (89 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih helicase subunit xpb (95 kDa, Protein from Saccharomyces cerevisiae)
- Non-template strand dna (9 kDa, DNA from Saccharomyces cerevisiae)
- General transcription factor tfiih (weak binding) (Complex from Saccharomyces cerevisiae)
- Template strand dna (9 kDa, DNA from Saccharomyces cerevisiae)
- Rna polymerase ii transcription factor b subunit 2 (58 kDa, Protein from Saccharomyces cerevisiae)
- Tfb1 (58 kDa, Protein from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- General transcription and dna repair factor iih subunit tfb5 (8 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih (52 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb4 (37 kDa, Protein from Saccharomyces cerevisiae)
Faylo JL, van Eeuwen T, Kim HJ, Gorbea Colon JJ, Garcia BA, Murakami K, Christianson DW
Nat Commun (2021) 12 pp. 3487-3487 [ Pubmed: 34108468 DOI: doi:10.1038/s41467-021-23589-9 ]
Cryo-EM asymmetric structure of Grafix-stabilized PaFS octameric prenyltransferase domain
Faylo JL, van Eeuwen T, Kim HJ, Gorbea Colon JJ, Garcia BA, Murakami K, Christianson DW
Nat Commun (2021) 12 pp. 3487-3487 [ Pubmed: 34108468 DOI: doi:10.1038/s41467-021-23589-9 ]
Cryo-EM reconstruction of Grafix-stabilized PaFS octameric prenyltransferase domain
Faylo JL, van Eeuwen T, Kim HJ, Gorbea Colon JJ, Garcia BA, Murakami K, Christianson DW
Nat Commun (2021) 12 pp. 3487-3487 [ Pubmed: 34108468 DOI: doi:10.1038/s41467-021-23589-9 ]