Cryo-EM structure of the active Lactococcus lactis Csm bound to target in post-cleavage stage
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 9ash
Q-score: 0.56
Goswami HN, Ahmadizadeh F, Wang B, Addo-Yobo D, Zhao Y, Whittington AC, He H, Terns MP, Li H
Nucleic Acids Res (2024) 52 pp. 10619-10629 [ Pubmed: 38989619 DOI: doi:10.1093/nar/gkae603 ]
- Crispr system single-strand-specific deoxyribonuclease cas10/csm1 (subtype iii-a) (87 kDa, Protein from Lactococcus lactis subsp. lactis)
- Crispr system cms endoribonuclease csm3 (23 kDa, Protein from Lactococcus lactis subsp. lactis)
- Atp bound lactococcus lactis csm crispr-cas complex with stable cas10 (Complex from Lactococcus lactis subsp. lactis)
- Crispr rna (11 kDa, RNA from Lactococcus lactis subsp. lactis)
- Crispr-associated protein csm4 (33 kDa, Protein from Lactococcus lactis subsp. lactis)
- Rna (5'-d(*(atp))-r(p*ap*a)-3') (1 kDa, RNA from Lactococcus lactis subsp. lactis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Target rna (11 kDa, RNA from Lactococcus lactis subsp. lactis)
- Magnesium ion (24 Da, Ligand)
- Crispr system cms protein csm5 (40 kDa, Protein from Lactococcus lactis subsp. lactis)
- Water (18 Da, Ligand)
- Crispr system cms protein csm2 (17 kDa, Protein from Lactococcus lactis subsp. lactis)
Cryo-EM structure of the active Lactococcus lactis Csm bound to target in pre-cleavage stage
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 9asi
Q-score: 0.467
Goswami HN, Ahmadizadeh F, Wang B, Addo-Yobo D, Zhao Y, Whittington AC, He H, Terns MP, Li H
Nucleic Acids Res (2024) 52 pp. 10619-10629 [ Pubmed: 38989619 DOI: doi:10.1093/nar/gkae603 ]
- Crispr system cms endoribonuclease csm3 (23 kDa, Protein from Lactococcus lactis subsp. lactis)
- Crispr rna (11 kDa, RNA from Lactococcus lactis subsp. lactis)
- Crispr-associated protein csm4 (33 kDa, Protein from Lactococcus lactis subsp. lactis)
- Adenosine monophosphate (347 Da, Ligand)
- Crispr system cms protein csm5 (40 kDa, Protein from Lactococcus lactis subsp. lactis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Crispr system single-strand-specific deoxyribonuclease cas10/csm1 (subtype iii-a) (87 kDa, Protein from Lactococcus lactis subsp. lactis)
- Target rna (11 kDa, RNA from Lactococcus lactis subsp. lactis)
- Magnesium ion (24 Da, Ligand)
- Lactococcus lactis csm crispr-cas complex, atp bound and cas10 flexible (Complex from Lactococcus lactis subsp. lactis)
- Crispr system cms protein csm2 (17 kDa, Protein from Lactococcus lactis subsp. lactis)
Cryo-EM structure of guide RNA and target RNA bound Cas7-11
Goswami HN, Rai J, Das A, Li H
Elife (2022) 11 [ DOI: 10.7554/elife.81678 Pubmed: 36190192 ]
Image sets:
Cryo-EM structure of guide RNA and target RNA bound Cas7-11
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 8d1v
Q-score: 0.547
Goswami HN, Rai J, Das A, Li H
eLife (2022) 11 [ DOI: doi:10.7554/eLife.81678 Pubmed: 36190192 ]
- Cryoem structure of type iii-e cas7-11 from desulfonema ishimotonii (Complex from Desulfonema ishimotonii)
- Crispr rna (34-mer) (10 kDa, RNA from Desulfonema ishimotonii)
- Ss target rna (5'-r(p*ap*gp*cp*up*up*gp*gp*up*up*cp*ap*ap*ap*gp*ap*ap*cp*g)-3') (5 kDa, RNA from Desulfonema ishimotonii)
- Crispr-associated ramp family protein (183 kDa, Protein from Desulfonema ishimotonii)
- Zinc ion (65 Da, Ligand)