PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8r9w
Q-score: 0.531
Du W, Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ
Nat Commun (2024) 15 pp. 5330-5330 [ Pubmed: 38909062 DOI: doi:10.1038/s41467-024-49693-0 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 22c10 antibody light chain (11 kDa, Protein from Homo sapiens)
- Pdcov spike glycoprotein ectodomain in complex with the 22c10 antibody fab fragment (520 kDa, Complex from Homo sapiens)
- Spike protein (119 kDa, Protein from Deltacoronavirus)
- 22c10 antibody heavy chain (13 kDa, Protein from Homo sapiens)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8r9x
Q-score: 0.542
Du W, Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ
Nat Commun (2024) 15 pp. 5330-5330 [ Pubmed: 38909062 DOI: doi:10.1038/s41467-024-49693-0 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 22c10 antibody light chain (11 kDa, Protein from Homo sapiens)
- Local refinement of the pdcov spike glycoprotein ectodomain in complex with the 22c10 antibody fab fragment (78 kDa, Complex from Homo sapiens)
- Pdcov spike glycoprotein s1a domain (119 kDa, Protein from Homo sapiens)
- 22c10 antibody heavy chain (13 kDa, Protein from Homo sapiens)
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 42H3 antibody Fab fragments
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8r9y
Q-score: 0.522
Du W, Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ
Nat Commun (2024) 15 pp. 5330-5330 [ Pubmed: 38909062 DOI: doi:10.1038/s41467-024-49693-0 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pdcov spike s1b domain in complex with the 67b12 and 42h3 antibody fab fragments (105 kDa, Complex from Homo sapiens)
- Spike protein (22 kDa, Protein from Porcine deltacoronavirus)
- 42h3 antibody light chain (23 kDa, Protein from Homo sapiens)
- 67b12 antibody heavy chain (22 kDa, Protein from Homo sapiens)
- 67b12 antibody light chain (23 kDa, Protein from Homo sapiens)
- 42h3 antibody heavy chain (23 kDa, Protein from Homo sapiens)
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 46E6 antibody Fab fragments
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8r9z
Q-score: 0.539
Du W, Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ
Nat Commun (2024) 15 pp. 5330-5330 [ Pubmed: 38909062 DOI: doi:10.1038/s41467-024-49693-0 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 67b12 antibody heavy chain (22 kDa, Protein from Homo sapiens)
- 67b12 antibody light chain (23 kDa, Protein from Homo sapiens)
- 46e6 antibody heavy chain (23 kDa, Protein from Homo sapiens)
- Pdcov spike s1b domain in complex with the 67b12 and 46e6 antibody fab fragments (105 kDa, Complex from Homo sapiens)
- 46e6 antibody heavy chain (23 kDa, Protein from Homo sapiens)
- Spike protein (12 kDa, Protein from Porcine deltacoronavirus)
Du W, Janssens R, Mykytyn AZ, Li W, Drabek D, van Haperen R, Chatziandreou M, Rissmann M, van der Lee J, van Dortmondt M, Martin IS, van Kuppeveld FJM, Hurdiss DL, Haagmans BL, Grosveld F, Bosch BJ
Front Immunol (2023) 14 pp. 1111385-1111385 [ Pubmed: 36895554 DOI: doi:10.3389/fimmu.2023.1111385 ]
Du W, Janssens R, Mykytyn AZ, Li W, Drabek D, van Haperen R, Chatziandreou M, Rissmann M, van der Lee J, van Dortmondt M, Martin IS, van Kuppeveld FJM, Hurdiss DL, Haagmans BL, Grosveld F, Bosch BJ
Front Immunol (2023) 14 pp. 1111385-1111385 [ Pubmed: 36895554 DOI: doi:10.3389/fimmu.2023.1111385 ]
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8c8p
Q-score: 0.22
Du W, Janssens R, Mykytyn AZ, Li W, Drabek D, van Haperen R, Chatziandreou M, Rissmann M, van der Lee J, van Dortmondt M, Martin IS, van Kuppeveld FJM, Hurdiss DL, Haagmans BL, Grosveld F, Bosch BJ
Front Immunol (2023) 14 pp. 1111385-1111385 [ Pubmed: 36895554 DOI: doi:10.3389/fimmu.2023.1111385 ]
- Heavy-chain-only antibody 10d12 (41 kDa, Protein from Mus musculus)
- Spike glycoprotein,sars-cov-2 spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike glycoprotein in complex with the 10d12 heavy-chain-only antibody (Complex from Severe acute respiratory syndrome coronavirus 2)
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 46C12 antibody Fab fragment
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7pnm
Q-score: 0.315
Wang C, Hesketh EL, Shamorkina TM, Li W, Franken PJ, Drabek D, van Haperen R, Townend S, van Kuppeveld FJM, Grosveld F, Ranson NA, Snijder J, de Groot RJ, Hurdiss DL, Bosch BJ
Nat Commun (2022) 13 pp. 2921-2921 [ DOI: doi:10.1038/s41467-022-30658-0 Pubmed: 35614127 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (146 kDa, Protein from Human coronavirus OC43)
- 46c12 antibody heavy chain (13 kDa, Protein from Homo sapiens)
- 46c12 antibody light chain (12 kDa, Protein from Homo sapiens)
- Human coronavirus oc43 spike glycoprotein ectodomain in complex with the 46c12 antibody fab fragment (583 kDa, Complex from Human coronavirus OC43)
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab fragment
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7pnq
Q-score: 0.166
Wang C, Hesketh EL, Shamorkina TM, Li W, Franken PJ, Drabek D, van Haperen R, Townend S, van Kuppeveld FJM, Grosveld F, Ranson NA, Snijder J, de Groot RJ, Hurdiss DL, Bosch BJ
Nat Commun (2022) 13 pp. 2921-2921 [ DOI: doi:10.1038/s41467-022-30658-0 Pubmed: 35614127 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human coronavirus oc43 spike glycoprotein ectodomain in complex with the 43e6 antibody fab fragment (583 kDa, Complex from Human coronavirus OC43)
- 43e6 antibody heavy chain (13 kDa, Protein from Homo sapiens)
- 43e6 antibody light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (146 kDa, Protein from Human coronavirus OC43)
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 47C9 antibody Fab fragment
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7po5
Q-score: 0.306
Wang C, Hesketh EL, Shamorkina TM, Li W, Franken PJ, Drabek D, van Haperen R, Townend S, van Kuppeveld FJM, Grosveld F, Ranson NA, Snijder J, de Groot RJ, Hurdiss DL, Bosch BJ
Nat Commun (2022) 13 pp. 2921-2921 [ DOI: doi:10.1038/s41467-022-30658-0 Pubmed: 35614127 ]
- Human coronavirus oc43 spike glycoprotein ectodomain in complex with the 47c9 antibody fab fragment (583 kDa, Complex from Human coronavirus OC43)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (146 kDa, Protein from Human coronavirus OC43)
- 47c9 antibody heavy chain (13 kDa, Protein from Homo sapiens)
- 47c9 antibody light chain (11 kDa, Protein from Homo sapiens)