Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 7.5
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7xgz
Q-score: 0.314
Chen NC, Wang CH, Yoshimura M, Yeh YQ, Guan HH, Chuankhayan P, Lin CC, Lin PJ, Huang YC, Wakatsuki S, Ho MC, Chen CJ
Nat Commun (2023) 14 pp. 545- [ DOI: doi:10.1038/s41467-023-36235-3 ]
- Capsid protein alpha (57 kDa, Protein from Lake Sinai virus 2)
- Lake sinai virus 2 (Virus from Lake Sinai virus 2)
Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 7.5
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7xpa
Q-score: 0.338
Chen NC, Wang CH, Yoshimura M, Yeh YQ, Guan HH, Chuankhayan P, Lin CC, Lin PJ, Huang YC, Wakatsuki S, Ho MC, Chen CJ
Nat Commun (2023) 14 pp. 545-545 [ Pubmed: 36726015 DOI: doi:10.1038/s41467-023-36235-3 ]
- Capsid protein alpha (57 kDa, Protein from Lake Sinai virus 2)
- Lake sinai virus 2 (Virus from Lake Sinai virus 2)
Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 6.5
Resolution: 3.91 Å
EM Method: Single-particle
Fitted PDBs: 7xpb
Q-score: 0.288
Chen NC, Wang CH, Yoshimura M, Yeh YQ, Guan HH, Chuankhayan P, Lin CC, Lin PJ, Huang YC, Wakatsuki S, Ho MC, Chen CJ
Nat Commun (2023) 14 pp. 545-545 [ Pubmed: 36726015 DOI: doi:10.1038/s41467-023-36235-3 ]
- Capsid protein alpha (57 kDa, Protein from Lake Sinai virus 2)
- Lake sinai virus 2 (Virus from Lake Sinai virus 2)
Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 6.5
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 7xpd
Q-score: 0.271
Chen NC, Wang CH, Yoshimura M, Yeh YQ, Guan HH, Chuankhayan P, Lin CC, Lin PJ, Huang YC, Wakatsuki S, Ho MC, Chen CJ
Nat Commun (2023) 14 pp. 545-545 [ Pubmed: 36726015 DOI: doi:10.1038/s41467-023-36235-3 ]
- Capsid protein alpha (57 kDa, Protein from Lake Sinai virus 2)
- Lake sinai virus 2 (Virus from Lake Sinai virus 2)
Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 8.5
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 7xpe
Q-score: 0.325
Chen NC, Wang CH, Yoshimura M, Yeh YQ, Guan HH, Chuankhayan P, Lin CC, Lin PJ, Huang YC, Wakatsuki S, Ho MC, Chen CJ
Nat Commun (2023) 14 pp. 545-545 [ Pubmed: 36726015 DOI: doi:10.1038/s41467-023-36235-3 ]
- Capsid protein alpha (57 kDa, Protein from Lake Sinai virus 2)
- Lake sinai virus 2 (Virus from Lake Sinai virus 2)
Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 8.5
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7xpf
Q-score: 0.351
Chen NC, Wang CH, Yoshimura M, Yeh YQ, Guan HH, Chuankhayan P, Lin CC, Lin PJ, Huang YC, Wakatsuki S, Ho MC, Chen CJ
Nat Commun (2023) 14 pp. 545-545 [ Pubmed: 36726015 DOI: doi:10.1038/s41467-023-36235-3 ]
- Capsid protein alpha (57 kDa, Protein from Lake Sinai virus 2)
- Lake sinai virus 2 (Virus from Lake Sinai virus 2)
Cryo-EM structure of the T=3 lake sinai virus 1 (delta-N48) virus-like capsid at pH 6.5
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 7xpg
Q-score: 0.205
Chen NC, Wang CH, Yoshimura M, Yeh YQ, Guan HH, Chuankhayan P, Lin CC, Lin PJ, Huang YC, Wakatsuki S, Ho MC, Chen CJ
Nat Commun (2023) 14 pp. 545-545 [ Pubmed: 36726015 DOI: doi:10.1038/s41467-023-36235-3 ]
- Capsid protein alpha (62 kDa, Protein from Lake Sinai virus 1)
- Rna (5'-r(p*up*g)-3') (606 Da, RNA from Escherichia coli)
- Lake sinai virus 2 (Virus from Lake Sinai virus 2)
Cryo-EM structure of T=1 Penaeus vannamei nodavirus
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6ab5
Q-score: 0.486
Chen NC, Yoshimura M, Miyazaki N, Guan HH, Chuankhayan P, Lin CC, Chen SK, Lin PJ, Huang YC, Iwasaki K, Nakagawa A, Chan SI, Chen CJ
Commun Biol (2019) 2 pp. 72-72 [ Pubmed: 30820467 DOI: doi:10.1038/s42003-019-0311-z ]
- Capsid protein (40 kDa, Protein from Penaeus vannamei nodavirus)
- Penaeus vannamei nodavirus (Virus from Penaeus vannamei nodavirus)
Cryo-EM structure of T=3 Penaeus vannamei nodavirus
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6ab6
Q-score: 0.505
Chen NC, Yoshimura M, Miyazaki N, Guan HH, Chuankhayan P, Lin CC, Chen SK, Lin PJ, Huang YC, Iwasaki K, Nakagawa A, Chan SI, Chen CJ
Commun Biol (2019) 2 pp. 72-72 [ Pubmed: 30820467 DOI: doi:10.1038/s42003-019-0311-z ]
- Capsid protein (40 kDa, Protein from Penaeus vannamei nodavirus)
- Calcium ion (40 Da, Ligand)
- Penaeus vannamei nodavirus (Virus from Penaeus vannamei nodavirus)