CryoEM structure of TnsC(1-503) bound to TnsD(1-318) from E.coli Tn7
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 8glu
Q-score: 0.404
Shen Y, Krishnan SS, Petassi MT, Hancock MA, Peters JE, Guarne A
Mol Cell (2024) 84 pp. 2368-2381.e6 [ Pubmed: 38834067 DOI: doi:10.1016/j.molcel.2024.05.012 ]
- Transposon tn7 transposition protein tnsc (59 kDa, Protein from Escherichia coli)
- Transposon tn7 transposition protein tnsd (36 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Complex of tnsc(1-503) bound to tnsd(1-318) with cofactors atp and adp (220 kDa, Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 8glw
Q-score: 0.399
Shen Y, Krishnan SS, Petassi MT, Hancock MA, Peters JE, Guarne A
Mol Cell (2024) 84 pp. 2368-2381.e6 [ Pubmed: 38834067 DOI: doi:10.1016/j.molcel.2024.05.012 ]
- Complex of tnsc(1-503) bound to tnsd(1-318) and dna with cofactors atp and adp (550 kDa, Complex from Escherichia coli)
- Transposon tn7 transposition protein tnsc (59 kDa, Protein from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Transposon tn7 transposition protein tnsd (36 kDa, Protein from Escherichia coli)
- Dna (50-mer) (15 kDa, DNA from Escherichia coli)
- Dna (50-mer) (15 kDa, DNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 8glx
Q-score: 0.327
Shen Y, Krishnan SS, Petassi MT, Hancock MA, Peters JE, Guarne A
Mol Cell (2024) 84 pp. 2368-2381.e6 [ Pubmed: 38834067 DOI: doi:10.1016/j.molcel.2024.05.012 ]
- Dna (50-mer) (15 kDa, DNA from Escherichia coli)
- Tnsd(1-318) (Complex from Escherichia coli)
- Transposon tn7 transposition protein tnsc (59 kDa, Protein from Escherichia coli)
- Tnsc(1-503) (Complex from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Complex of tnsc(1-503) bound to tnsd(1-318) and dna with cofactors atp and adp (500 kDa, Complex)
- Magnesium ion (24 Da, Ligand)
- Transposon tn7 transposition protein tnsd (36 kDa, Protein from Escherichia coli)
- Dna (Complex from Escherichia coli)
- Dna (50-mer) (15 kDa, DNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8vcj
Q-score: 0.456
Shen Y, Krishnan SS, Petassi MT, Hancock MA, Peters JE, Guarne A
Mol Cell (2024) 84 pp. 2368-2381.e6 [ Pubmed: 38834067 DOI: doi:10.1016/j.molcel.2024.05.012 ]
- Transposon tn7 transposition protein tnsc (59 kDa, Protein from Escherichia coli)
- Dna (15 kDa, DNA from Escherichia coli)
- Dna (15 kDa, DNA from Escherichia coli)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Tnsc(1-503) and tnsd(1-318) (Complex from Escherichia coli)
- Transposon tn7 transposition protein tnsd (36 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Dna (Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Complex of tnsc(1-503) bound to tnsd(1-318) and dna with cofactors atpgs and adp (550 kDa, Complex)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Resolution: 3.83 Å
EM Method: Single-particle
Fitted PDBs: 8vct
Q-score: 0.396
Shen Y, Krishnan SS, Petassi MT, Hancock MA, Peters JE, Guarne A
Mol Cell (2024) 84 pp. 2368-2381.e6 [ Pubmed: 38834067 DOI: doi:10.1016/j.molcel.2024.05.012 ]
- Dna (50-mer) (15 kDa, DNA from Escherichia coli)
- Transposon tn7 transposition protein tnsc (59 kDa, Protein from Escherichia coli)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Cyoem structure of the tnsc(1-503)-tnsd(1-318)-dna complex in a 6:2:1 stoichiometry from e. coli tn7 bound to atpgs and adp (Complex)
- Transposon tn7 transposition protein tnsd (36 kDa, Protein from Escherichia coli)
- Tnsc(1-503)-tnsd(1-318) (Complex from Escherichia coli)
- Dna (Complex from Escherichia coli)
- Dna (50-mer) (15 kDa, DNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Cryo-electron microscopy structure of TnsC(1-503)A225V bound to DNA
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 7mcs
Q-score: 0.439
Shen Y, Gomez-Blanco J, Petassi MT, Peters JE, Ortega J, Guarne A
Nat Struct Mol Biol (2022) 29 pp. 143-151 [ Pubmed: 35173349 DOI: doi:10.1038/s41594-022-00724-8 ]
- Dna (5'-d(p*cp*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp*gp*c)-3') (4 kDa, DNA from synthetic construct)
- Dna (5'-d(p*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp*g)-3') (4 kDa, DNA from synthetic construct)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Tnsc(1-503)a225v bound to dna (Complex from Escherichia coli)
- Complex of tnsc bound to dna in the presence of amppnp. (30 kDa, Complex from Escherichia coli)
- Transposon tn7 transposition protein tnsc (59 kDa, Protein from Escherichia coli)
Bacterial 45SRbgA ribosomal particle class B
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ppf
Q-score: 0.436
Seffouh A, Jain N, Jahagirdar D, Basu K, Razi A, Ni X, Guarne A, Britton RA, Ortega J
Nucleic Acids Res (2019) 47 pp. 10414-10425 [ DOI: doi:10.1093/nar/gkz770 Pubmed: 31665744 ]
- 23s rrna (949 kDa, RNA from Bacillus subtilis)
- 50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis)
- Water (18 Da, Ligand)
- 50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis)
- 5s rrna (38 kDa, RNA from Bacillus subtilis)
- 50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis)
- 45srbga ribosomal assembly intermediate (Complex from Bacillus subtilis)
- 50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6ppk
Q-score: 0.354
Seffouh A, Jain N, Jahagirdar D, Basu K, Razi A, Ni X, Guarne A, Britton RA, Ortega J
Nucleic Acids Res (2019) 47 pp. 10414-10425 [ DOI: doi:10.1093/nar/gkz770 Pubmed: 31665744 ]
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis)
- 23s rrna (949 kDa, RNA from Bacillus subtilis)
- 50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis)
- 5s rrna (38 kDa, RNA from Bacillus subtilis)
- 50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis)
- Rbga + 45srbga ribosomal assembly intermediate complex (Complex from Bacillus subtilis)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis)
- Ribosome biogenesis gtpase a (32 kDa, Protein from Bacillus subtilis)
Bacterial 45SRbgA ribosomal particle class A
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6pvk
Q-score: 0.435
Seffouh A, Jain N, Jahagirdar D, Basu K, Razi A, Ni X, Guarne A, Britton RA, Ortega J
Nucleic Acids Res (2019) 47 pp. 10414-10425 [ DOI: doi:10.1093/nar/gkz770 Pubmed: 31665744 ]
- 23s rrna (949 kDa, RNA from Bacillus subtilis)
- 50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis)
- Water (18 Da, Ligand)
- 50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
- 45srbga ribosomal assembly intermediate class a (Complex from Bacillus subtilis)
- 50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit
Razi A, Davis JH, Hao Y, Jahagirdar D, Thurlow B, Basu K, Jain N, Gomez-Blanco J, Britton RA, Vargas J, Guarne A, Woodson SA, Williamson JR, Ortega J
Nucleic Acids Res (2019) 47 pp. 8301-8317 [ DOI: doi:10.1093/nar/gkz571 Pubmed: 31265110 ]
- 30s assembly intermediate (class d) (900 kDa, Complex from Escherichia coli)