Qian Y, Ma Z, Xu Z, Duan Y, Xiong Y, Xia R, Zhu X, Zhang Z, Tian X, Yin H, Liu J, Song J, Lu Y, Zhang A, Guo C, Jin L, Kim WJ, Ke J, Xu F, Huang Z, He Y
Nat Commun (2024) 15 pp. 7644-7644 [ Pubmed: 39223191 DOI: doi:10.1038/s41467-024-52174-z ]
- Cholesterol hemisuccinate (486 Da, Ligand)
- Frizzled-4 (60 kDa, Protein from Homo sapiens)
- Gpcr complex (450 kDa, Complex from Homo sapiens)
- Segment polarity protein dishevelled homolog dvl-2 (79 kDa, Protein from Homo sapiens)
Fzd4/DEP complex (local refined)
Qian Y, Ma Z, Xu Z, Duan Y, Xiong Y, Xia R, Zhu X, Zhang Z, Tian X, Yin H, Liu J, Song J, Lu Y, Zhang A, Guo C, Jin L, Kim WJ, Ke J, Xu F, Huang Z, He Y
Nat Commun (2024) 15 pp. 7644-7644 [ Pubmed: 39223191 DOI: doi:10.1038/s41467-024-52174-z ]
- Frizzled-4 (60 kDa, Protein from Homo sapiens)
- Gpcr complex (450 kDa, Complex from Homo sapiens)
- Segment polarity protein dishevelled homolog dvl-2 (79 kDa, Protein from Homo sapiens)
Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8iaz
Q-score: 0.548
Ren K, Zhou F, Zhang F, Yin M, Zhu Y, Wang S, Chen Y, Huang T, Wu Z, He J, Zhang A, Guo C, Huang Z
Cell Res (2024) 34 pp. 370-385 [ DOI: doi:10.1038/s41422-024-00952-1 Pubmed: 38575718 ]
- Rna (207-mer) (66 kDa, RNA from Firmicutes bacterium AM43-11BH)
- Transposase (44 kDa, Protein from Firmicutes bacterium AM43-11BH)
- Dna (5'-d(p*cp*cp*ap*tp*tp*ap*gp*gp*ap*gp*cp*tp*gp*ap*tp*g)-3') (4 kDa, DNA from Firmicutes bacterium AM43-11BH)
- The complex of protein with grna and target dna (Complex from Firmicutes bacterium AM43-11BH)
- Dna (5'-d(p*ap*cp*ap*tp*gp*gp*ap*cp*cp*ap*tp*cp*ap*gp*cp*tp*cp*cp*tp*ap*ap*tp*gp*g)-3') (7 kDa, DNA from Firmicutes bacterium AM43-11BH)
- Zinc ion (65 Da, Ligand)
Structure of the SPARTA complex
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8j7s
Q-score: 0.416
Guo M, Zhu Y, Lin Z, Yang D, Zhang A, Guo C, Huang Z
Cell Res (2023) 33 pp. 731-734 [ DOI: doi:10.1038/s41422-023-00850-y Pubmed: 37491603 ]
- Dna (5'-d(p*tp*ap*ap*tp*ap*gp*ap*tp*tp*ap*gp*ap*gp*cp*cp*gp*tp*cp*ap*ap*tp*ap*gp*a)-3') (7 kDa, DNA from Maribacter polysiphoniae)
- Tir domain-containing protein (49 kDa, Protein from Maribacter polysiphoniae)
- Piwi domain-containing protein (57 kDa, Protein from Maribacter polysiphoniae)
- Sparta complex (Complex from Maribacter polysiphoniae)
- Rna (5'-r(p*up*gp*ap*cp*gp*gp*cp*up*cp*up*ap*ap*up*cp*up*ap*up*up*a)-3') (6 kDa, RNA from Maribacter polysiphoniae)
Cryo-EM structure of LPS-bound GPR174 in complex with Gs protein
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7xv3
Q-score: 0.579
Liang J, Inoue A, Ikuta T, Xia R, Wang N, Kawakami K, Xu Z, Qian Y, Zhu X, Zhang A, Guo C, Huang Z, He Y
Nat Commun (2023) 14 pp. 1012-1012 [ DOI: doi:10.1038/s41467-023-36575-0 Pubmed: 36823105 ]
- Gpr174/gs complex (Complex from Homo sapiens)
- Water (18 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- (2~{s})-2-$l^{4}-azanyl-3-[[(2~{r})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid (497 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Nb35 (17 kDa, Protein from Lama glama)
- Probable g-protein coupled receptor 174 (38 kDa, Protein from Homo sapiens)
- Engineered g protein subunit s (mini-gs) (41 kDa, Protein from Homo sapiens)
Structure of a membrane protein G
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7wso
Q-score: 0.532
Ma X, Zhu Y, Chen Y, Wang S, Yang D, Ma Z, Zhang A, Zhang F, Guo C, Huang Z
Science (2022) 377 pp. 880-885 [ DOI: doi:10.1126/science.abo3828 Pubmed: 35981028 ]
- Complex (Complex from Homo sapiens)
- Immunoglobulin heavy constant gamma 1 (28 kDa, Protein from Homo sapiens)
- B-cell antigen receptor complex-associated protein alpha chain (15 kDa, Protein from Homo sapiens)
- B-cell antigen receptor complex-associated protein beta chain (16 kDa, Protein from Homo sapiens)
Structure of a membrane protein M3
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 7xt6
Q-score: 0.413
Ma X, Zhu Y, Chen Y, Wang S, Yang D, Ma Z, Zhang A, Zhang F, Guo C, Huang Z
Science (2022) 377 pp. 880-885 [ DOI: doi:10.1126/science.abo3828 Pubmed: 35981028 ]
- B-cell antigen receptor complex-associated protein beta chain (16 kDa, Protein from Homo sapiens)
- B-cell antigen receptor complex-associated protein alpha chain (15 kDa, Protein from Homo sapiens)
- Protein m (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Isoform 2 of immunoglobulin heavy constant mu (40 kDa, Protein from Homo sapiens)
Cryo-EM of Sphingosine 1-phosphate receptor 1 / Gi complex bound to FTY720p
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7eo2
Q-score: 0.472
Xu Z, Ikuta T, Kawakami K, Kise R, Qian Y, Xia R, Sun MX, Zhang A, Guo C, Cai XH, Huang Z, Inoue A, He Y
Nat Chem Biol (2022) 18 pp. 281-288 [ Pubmed: 34937912 DOI: doi:10.1038/s41589-021-00930-3 ]
- (2~{s})-2-azanyl-4-(4-octylphenyl)-2-[[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxymethyl]butan-1-ol (387 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- S1pr1/gi complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Sphingosine 1-phosphate receptor 1 (38 kDa, Protein from Homo sapiens)
- Scfv16 (26 kDa, Protein from Homo sapiens)
Cryo-EM of Sphingosine 1-phosphate receptor 1 / Gi complex bound to BAF312
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 7eo4
Q-score: 0.516
Xu Z, Ikuta T, Kawakami K, Kise R, Qian Y, Xia R, Sun MX, Zhang A, Guo C, Cai XH, Huang Z, Inoue A, He Y
Nat Chem Biol (2022) 18 pp. 281-288 [ Pubmed: 34937912 DOI: doi:10.1038/s41589-021-00930-3 ]
- 1-[[4-[(~{e})-~{n}-[[4-cyclohexyl-3-(trifluoromethyl)phenyl]methoxy]-~{c}-methyl-carbonimidoyl]-2-ethyl-phenyl]methyl]azetidine-3-carboxylic acid (516 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- S1pr1/gi complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Sphingosine 1-phosphate receptor 1 (42 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Scfv16 (26 kDa, Protein from Homo sapiens)
Cryo-EM of Sphingosine 1-phosphate receptor 1 / Gi complex bound to S1P
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7wf7
Q-score: 0.404
Xu Z, Ikuta T, Kawakami K, Kise R, Qian Y, Xia R, Sun MX, Zhang A, Guo C, Cai XH, Huang Z, Inoue A, He Y
Nat Chem Biol (2022) 18 pp. 281-288 [ Pubmed: 34937912 DOI: doi:10.1038/s41589-021-00930-3 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- S1pr1/gi complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Sphingosine 1-phosphate receptor 1 (42 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- (2s,3r,4e)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate (379 Da, Ligand)
- Scfv16 (26 kDa, Protein from Homo sapiens)