Integrin alpha-v beta-8 in complex with the Fab of 130H2
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 9ind
Q-score: 0.533
Guo C, Sun H, Du Y, Dai X, Pang Y, Han Z, Xiong X, Li S, Zhang J, Zheng Q, Gui X
J Exp Clin Cancer Res (2025) 44 pp. 1-1 [ Pubmed: 39743547 DOI: doi:10.1186/s13046-024-03250-1 ]
- Integrin alpha-v beta-8 (Complex from Homo)
- 130h2-fab (Complex from Mus musculus)
- Integrin alpha-v heavy chain (47 kDa, Protein from Homo sapiens)
- Integrin beta-8 (39 kDa, Protein from Homo sapiens)
- Integrin alpha-v beta-8 complexed with antibody fab fragment of 130h2 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The heavy chain of 130h2-fab (13 kDa, Protein from Mus musculus)
- The light chain of 130h2-fab (11 kDa, Protein from Mus musculus)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8e4y
Q-score: 0.502
Johnson ZL, Ammirati M, Wasilko DJ, Chang JS, Noell S, Foley TL, Yoon H, Smith K, Asano S, Hales K, Wan M, Yang Q, Piotrowski MA, Farley KA, Gilbert T, Aschenbrenner LM, Fennell KF, Dutra JK, Xu M, Guo C, Varghese AE, Bellenger J, Quinn A, Am Ende CW, West GM, Griffor MC, Bennett D, Calabrese M, Steppan CM, Han S, Wu H
Nat Struct Mol Biol (2023) 30 pp. 22-30 [ Pubmed: 36522428 DOI: doi:10.1038/s41594-022-00884-7 ]
- [(2r,3s,4r,5r)-5-(6-amino-9h-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methyl (3r)-3-hydroxy-2,2-dimethyl-4-oxo-4-{[3-oxo-3-({2-[(2-oxohexadecyl)sulfanyl]ethyl}amino)propyl]amino}butyl dihydrogen diphosphate (non-preferred name) (1 kDa, Ligand)
- Glycerol-3-phosphate acyltransferase 1 (86 kDa, Complex from Homo sapiens)
- Glycerol-3-phosphate acyltransferase 1, mitochondrial (86 kDa, Protein from Homo sapiens)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl hexadecanoate (410 Da, Ligand)
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 8e50
Q-score: 0.444
Johnson ZL, Ammirati M, Wasilko DJ, Chang JS, Noell S, Foley TL, Yoon H, Smith K, Asano S, Hales K, Wan M, Yang Q, Piotrowski MA, Farley KA, Gilbert T, Aschenbrenner LM, Fennell KF, Dutra JK, Xu M, Guo C, Varghese AE, Bellenger J, Quinn A, Am Ende CW, West GM, Griffor MC, Bennett D, Calabrese M, Steppan CM, Han S, Wu H
Nat Struct Mol Biol (2023) 30 pp. 22-30 [ Pubmed: 36522428 DOI: doi:10.1038/s41594-022-00884-7 ]
- Coenzyme a (767 Da, Ligand)
- Glycerol-3-phosphate acyltransferase 1 (86 kDa, Complex from Homo sapiens)
- Glycerol-3-phosphate acyltransferase 1, mitochondrial (86 kDa, Protein from Homo sapiens)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl hexadecanoate (410 Da, Ligand)
Cryo-EM structure of a membrane protein(WT)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7fjd
Q-score: 0.552
Chen Y, Zhu Y, Li X, Gao W, Zhen Z, Huang B, Ma Z, Zhang A, Song X, Ma Y, Guo C, Zhang F, Huang Z
Mol Cell (2022) 82 pp. 1278-1287.e5 [ Pubmed: 35271814 DOI: doi:10.1016/j.molcel.2022.02.017 ]
- Immune system (Complex from Homo sapiens)
- T cell receptor beta variable 6-5,m1-specific t cell receptor beta chain,t cell receptor beta constant 2 (34 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (18 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- T cell receptor alpha variable 12-3,possible j 11 gene segment,t cell receptor alpha chain constant (30 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
Cryo-EM structure of a membrane protein(LL)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7fje
Q-score: 0.559
Chen Y, Zhu Y, Li X, Gao W, Zhen Z, Huang B, Ma Z, Zhang A, Song X, Ma Y, Guo C, Zhang F, Huang Z
Mol Cell (2022) 82 pp. 1278-1287.e5 [ Pubmed: 35271814 DOI: doi:10.1016/j.molcel.2022.02.017 ]
- Immune system (Complex from Homo sapiens)
- T cell receptor beta variable 6-5,m1-specific t cell receptor beta chain,t cell receptor beta constant 2 (34 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (18 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- T cell receptor alpha variable 12-3,possible j 11 gene segment,t cell receptor alpha chain constant (30 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
Cryo-EM structure of a membrane protein(CS)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7fjf
Q-score: 0.482
Chen Y, Zhu Y, Li X, Gao W, Zhen Z, Huang B, Ma Z, Zhang A, Song X, Ma Y, Guo C, Zhang F, Huang Z
Mol Cell (2022) 82 pp. 1278-1287.e5 [ Pubmed: 35271814 DOI: doi:10.1016/j.molcel.2022.02.017 ]
- Immune system (Complex from Homo sapiens)
- T cell receptor beta variable 6-5,m1-specific t cell receptor beta chain,t cell receptor beta constant 2 (34 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (18 kDa, Protein from Homo sapiens)
- Cholest-5-en-3-yl hydrogen sulfate (466 Da, Ligand)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- T cell receptor alpha variable 12-3,possible j 11 gene segment,t cell receptor alpha chain constant (30 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)