Human H3 nucleosome assembled on alpha-satellite DNA (most unwrapped)
Nagpal H, Ali-Ahmad A, Hirano Y, Cai W, Halic M, Fukagawa T, Sekulic N, Fierz B
Nat Commun (2023) 14 pp. 8227-8227 [ Pubmed: 38086807 DOI: doi:10.1038/s41467-023-43739-5 ]
- Human alpha-satellite dna (DNA from Homo sapiens)
- Human h4 histone (Protein from Homo sapiens)
- Human h3 nucleosome assembled on alpha-satellite dna (most unwrapped) (Complex from Homo sapiens)
- Human histone h2b (Protein from Homo sapiens)
- Human histone h3 (Protein from Homo sapiens)
- Human histone h2a (Protein from Homo sapiens)
Human CENP-A nucleosome assembled on alpha-satellite DNA (most wrapped DNA)
Nagpal H, Ali-Ahmad A, Hirano Y, Cai W, Halic M, Fukagawa T, Sekulic N, Fierz B
Nat Commun (2023) 14 pp. 8227-8227 [ Pubmed: 38086807 DOI: doi:10.1038/s41467-023-43739-5 ]
- Human histone cenp-a (Protein from Homo sapiens)
- Human histone h2b (Protein from Homo sapiens)
- Human histone h4 (Protein from Homo sapiens)
- Human histone h2a (Protein from Homo sapiens)
- Human cenp-a nucleosome assembled on alpha-satellite dna (most wrapped dna) (Complex from Homo sapiens)
- Human alpha-satellite dna (DNA from Homo sapiens)
Human CENP-A nucleosome assembled on alpha-satellite DNA (partially unwrapped)
Nagpal H, Ali-Ahmad A, Hirano Y, Cai W, Halic M, Fukagawa T, Sekulic N, Fierz B
Nat Commun (2023) 14 pp. 8227-8227 [ Pubmed: 38086807 DOI: doi:10.1038/s41467-023-43739-5 ]
- Human histone cenp-a (Protein from Homo sapiens)
- Human histone h2b (Protein from Homo sapiens)
- Human histone h4 (Protein from Homo sapiens)
- Human cenp-a nucleosome assembled on alpha-satellite dna (partially unwrapped dna) (Complex from Homo sapiens)
- Human histone h2a (Protein from Homo sapiens)
- Human alpha-satellite dna (DNA from Homo sapiens)
Human CENP-A nucleosome assembled on alpha-satellite DNA in complex with CENP-B (most wrapped DNA)
Nagpal H, Ali-Ahmad A, Hirano Y, Cai W, Halic M, Fukagawa T, Sekulic N, Fierz B
Nat Commun (2023) 14 pp. 8227-8227 [ Pubmed: 38086807 DOI: doi:10.1038/s41467-023-43739-5 ]
- Human histone cenp-a (Protein from Homo sapiens)
- Human cenp-b (Protein from Homo sapiens)
- Human histone h2b (Protein from Homo sapiens)
- Human histone h4 (Protein from Homo sapiens)
- Human cenp-a nucleosome assembled on alpha-satellite dna in complex with cenp-b (most wrapped dna) (Complex from Homo sapiens)
- Human histone h2a (Protein from Homo sapiens)
- Human alpha-satellite dna (Protein from Homo sapiens)
Nagpal H, Ali-Ahmad A, Hirano Y, Cai W, Halic M, Fukagawa T, Sekulic N, Fierz B
Nat Commun (2023) 14 pp. 8227-8227 [ Pubmed: 38086807 DOI: doi:10.1038/s41467-023-43739-5 ]
- Human cenp-b (Protein from Homo sapiens)
- Human histone cenp-a (Protein from Homo sapiens)
- Human histone h2b (Protein from Homo sapiens)
- Human histone h4 (Protein from Homo sapiens)
- Human cenp-a nucleosome assembled on alpha-satellite dna in complex with cenp-b (partially unwrapped dna) (Complex from Homo sapiens)
- Human histone h2a (Protein from Homo sapiens)
- Human alpha-satellite dna (DNA from Homo sapiens)
Human CENP-A nucleosome assembled on 601 DNA with CENP-B box in complex with CENP-B
Nagpal H, Ali-Ahmad A, Hirano Y, Cai W, Halic M, Fukagawa T, Sekulic N, Fierz B
Nat Commun (2023) 14 pp. 8227-8227 [ Pubmed: 38086807 DOI: doi:10.1038/s41467-023-43739-5 ]
- Human histone cenp-a (Protein from Homo sapiens)
- Human cenp-b (Protein from Homo sapiens)
- 601 synthetic dna with cenp-b box (DNA from synthetic construct)
- Human histone h2b (Protein from Homo sapiens)
- Human histone h4 (Protein from Homo sapiens)
- Human histone h2a (Protein from Homo sapiens)
- Human cenp-a nucleosome assembled on 601 dna with cenp-b box in complex with cenp-b (Complex from Homo sapiens)
Human Oct4 bound to nucleosome with human LIN28B sequence
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8g8e
Q-score: 0.254
Sinha KK, Bilokapic S, Du Y, Malik D, Halic M
Nature (2023) 619 pp. 378-384 [ DOI: doi:10.1038/s41586-023-06112-6 Pubmed: 37225990 ]
- Lin28b dna (32-mer) (56 kDa, DNA from Homo sapiens)
- Lin28b dna (32-mer) (55 kDa, DNA from Homo sapiens)
- Pou domain, class 5, transcription factor 1 (42 kDa, Protein from Homo sapiens)
- Human oct4 bound to a nucleosome with human lin28 dna sequence (Complex from Homo sapiens)
Interaction of H3 tail in LIN28B nucleosome with Oct4
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8g8g
Q-score: 0.218
Sinha KK, Bilokapic S, Du Y, Malik D, Halic M
Nature (2023) 619 pp. 378-384 [ DOI: doi:10.1038/s41586-023-06112-6 Pubmed: 37225990 ]
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Nucleosome with human lin28b sequence bound to human oct4 (Complex from Xenopus laevis)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
- Pou domain, class 5, transcription factor 1 (42 kDa, Protein from Homo sapiens)
- Lin28b dna (174-mer) (56 kDa, DNA from Homo sapiens)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Lin28b dna (174-mer) (55 kDa, DNA from Homo sapiens)
Oct4 interaction with H2A C-terminal tail in LIN28B nucleosome
Sinha KK, Bilokapic S, Du Y, Malik D, Halic M
Nature (2023) 619 pp. 378-384 [ DOI: doi:10.1038/s41586-023-06112-6 Pubmed: 37225990 ]
H4 tail conformation A in Oct4 bound LIN28 nucleosome
Sinha KK, Bilokapic S, Du Y, Malik D, Halic M
Nature (2023) 619 pp. 378-384 [ DOI: doi:10.1038/s41586-023-06112-6 Pubmed: 37225990 ]