SARS-CoV-2 Spike RBD (dimer) in complex with two Fu2 nanobodies
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7nll
Q-score: 0.522
Hanke L, Das H, Sheward DJ, Perez Vidakovics L, Urgard E, Moliner-Morro A, Kim C, Karl V, Pankow A, Smith NL, Porebski B, Fernandez-Capetillo O, Sezgin E, Pedersen GK, Coquet JM, Hallberg BM, Murrell B, McInerney GM
Nat Commun (2022) 13 pp. 155-155 [ DOI: doi:10.1038/s41467-021-27610-z Pubmed: 35013189 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanobody fu2 (Complex from Vicugna pacos)
- Nanobody fu2 (15 kDa, Protein from Vicugna pacos)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Receptor binding domain of sars-cov-2 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike rbd (two molecules) in complex with two fu2 nanobodies (35 kDa, Complex)
SARS-CoV-2 Spike (dimers) in complex with six Fu2 nanobodies
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 7ns6
Q-score: 0.372
Hanke L, Das H, Sheward DJ, Perez Vidakovics L, Urgard E, Moliner-Morro A, Kim C, Karl V, Pankow A, Smith NL, Porebski B, Fernandez-Capetillo O, Sezgin E, Pedersen GK, Coquet JM, Hallberg BM, Murrell B, McInerney GM
Nat Commun (2022) 13 pp. 155-155 [ DOI: doi:10.1038/s41467-021-27610-z Pubmed: 35013189 ]
- Fu2 nanobody (15 kDa, Protein from Vicugna pacos)
- Fu2 nanobody (Complex from Vicugna pacos)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike rbd (two molecules) in complex with two fu2 nanobodies (95 kDa, Complex)
- Sars-cov-2 spike, fibritin (Complex from Enterobacteria phage T4)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
Cryo-EM structure of the SARS-CoV-2 spike protein bound to neutralizing nanobodies (Ty1)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 6zxn
Q-score: 0.468
Hanke L, Vidakovics Perez L, Sheward DJ, Das H, Schulte T, Moliner-Morro A, Corcoran M, Achour A, Karlsson Hedestam GB, Hallberg BM, Murrell B, McInerney GM
Nat Commun (2020) 11 pp. 4420-4420 [ Pubmed: 32887876 DOI: doi:10.1038/s41467-020-18174-5 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanobody strongly neutralising and blocks ace2 binding. (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanobody ty1 (Complex from Vicugna pacos)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanobody ty1 (14 kDa, Protein from Vicugna pacos)
- Ternary complex between nanobody ty1 and spike. (14 kDa, Complex)
SARS-CoV-2 spike glycoprotein bound to nanobodies (Ty1)
Hanke L, Vidakovics Perez L, Sheward DJ, Das H, Schulte T, Moliner-Morro A, Corcoran M, Achour A, Karlsson Hedestam GB, Hallberg BM, Murrell B, McInerney GM
Nat Commun (2020) 11 pp. 4420-4420 [ Pubmed: 32887876 DOI: doi:10.1038/s41467-020-18174-5 ]