Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8gui
Q-score: 0.532
Onishi S, Uchiyama K, Sato K, Okada C, Kobayashi S, Hamada K, Nishizawa T, Nureki O, Ogata K, Sengoku T
Nat Commun (2024) 15 pp. 2580-2580 [ DOI: doi:10.1038/s41467-024-46910-8 Pubmed: 38519511 ]
- E3 ubiquitin-protein ligase bre1a (113 kDa, Protein from Homo sapiens)
- Dna (Complex)
- Bre1 (Complex from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from synthetic construct)
- Dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase bre1b (113 kDa, Protein from Homo sapiens)
- Bre1-nucleosome complex (Complex)
- Zinc ion (65 Da, Ligand)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone (Complex from Homo sapiens)
Human nucleosome core particle (free form)
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8guk
Q-score: 0.588
Onishi S, Uchiyama K, Sato K, Okada C, Kobayashi S, Hamada K, Nishizawa T, Nureki O, Ogata K, Sengoku T
Nat Commun (2024) 15 pp. 2580-2580 [ Pubmed: 38519511 DOI: doi:10.1038/s41467-024-46910-8 ]
- Hiistone (Complex)
- Dna (147-mer) (45 kDa, DNA from synthetic construct)
- Dna (Complex)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from synthetic construct)
- Bre1-nucleosome complex (Complex from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (13 kDa, Protein from Homo sapiens)
NSD2 E1099K mutant bound to nucleosome
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7e8d
Q-score: 0.556
Sato K, Kumar A, Hamada K, Okada C, Oguni A, Machiyama A, Sakuraba S, Nishizawa T, Nureki O, Kono H, Ogata K, Sengoku T
Nat Commun (2021) 12 pp. 6605-6605 [ DOI: doi:10.1038/s41467-021-26913-5 Pubmed: 34782608 ]
- Histone-lysine n-methyltransferase nsd2 (28 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Nsd2-nucleosome complex (Complex from Homo sapiens)
- Sinefungin (381 Da, Ligand)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (185-mer) (57 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (185-mer) (56 kDa, DNA from synthetic construct)
- Histone h2a type 1 (13 kDa, Protein from Homo sapiens)
Sato C, Hamada K, Ogura T, Miyazawa A, Iwasaki K, Hiroaki Y, Tani K, Terauchi A, Fujiyoshi Y, Mikoshiba K
J Mol Biol (2004) 336 pp. 155-164 [ Pubmed: 14741211 ]
- Ip3 receptor from mouse (1 MDa, Sample)
- Ip3 receptor (1 MDa, Protein from Mus musculus)