Cryo-EM structure of a short prokaryotic Argonaute system from archaeon Suldolobus islandicus
Dai Z, Chen Y, Guan Z, Chen X, Tan K, Yang K, Yan X, Liu Y, Gong Z, Han W, Zou T
Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf059 Pubmed: 39898546 ]
- Piwi domain-containing protein (52 kDa, Protein from Saccharolobus islandicus M.16.4)
- Siago-associated protein1, siaga1 (29 kDa, Protein from Saccharolobus islandicus M.16.4)
- Magnesium ion (24 Da, Ligand)
- Siago-siaga1 complex (Complex from Sulfolobus islandicus (strain M.16.4 / Kamchatka #3))
- Dna (5'-d(*cp*cp*tp*cp*cp*ap*gp*gp*gp*tp*ap*tp*cp*tp*ap*ap*gp*cp*tp*tp*tp*gp*ap*a)-3') (7 kDa, DNA from Saccharolobus islandicus M.16.4)
- Rna (5'-r(p*up*cp*ap*ap*ap*gp*cp*up*up*ap*gp*ap*up*ap*cp*cp*cp*up*gp*gp*a)-3') (6 kDa, RNA from Saccharolobus islandicus M.16.4)
Cryo-EM structure of human TRiC-tubulin-S2
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7x3j
Q-score: 0.246
Liu C, Jin M, Wang S, Han W, Zhao Q, Wang Y, Xu C, Diao L, Yin Y, Peng C, Bao L, Wang Y, Cong Y
Commun Biol (2023) 6 pp. 531-531 [ Pubmed: 37193829 DOI: doi:10.1038/s42003-023-04915-x ]
- T-complex protein 1 subunit zeta (58 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit beta (57 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit eta (59 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit epsilon (59 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit gamma (60 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit theta (59 kDa, Protein from Homo sapiens)
- Human tric-tubulin-s2 (Complex from Homo sapiens)
- T-complex protein 1 subunit delta (57 kDa, Protein from Homo sapiens)
cryo-EM structure of human TRiC-ADP
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7x3u
Q-score: 0.323
Liu C, Jin M, Wang S, Han W, Zhao Q, Wang Y, Xu C, Diao L, Yin Y, Peng C, Bao L, Wang Y, Cong Y
Commun Biol (2023) 6 pp. 531-531 [ Pubmed: 37193829 DOI: doi:10.1038/s42003-023-04915-x ]
- Human tric-adp state (Complex from Homo sapiens)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit beta (57 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit epsilon (59 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit zeta (58 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit gamma (60 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit eta (59 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit theta (59 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit delta (57 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Cryo-EM structure of the ribosome bound Bacteroides thetaiotaomicron EF-G2
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7uvp
Q-score: 0.459
To Be Published
- Water (18 Da, Ligand)
- Tetracycline resistance protein tetq (80 kDa, Protein from Bacteroides thetaiotaomicron VPI-5482)
- Magnesium ion (24 Da, Ligand)
- Ribosome-bound bacteroides thetaiotaomicron ef-g2 (Complex from Bacteroides thetaiotaomicron VPI-5482)
- Guanosine-5'-triphosphate (523 Da, Ligand)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7x0s
Q-score: 0.469
Liu C, Jin M, Wang S, Han W, Zhao Q, Wang Y, Xu C, Diao L, Yin Y, Peng C, Bao L, Wang Y, Cong Y
Commun Biol (2023) 6 pp. 531-531 [ Pubmed: 37193829 DOI: doi:10.1038/s42003-023-04915-x ]
- Water (18 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- T-complex protein 1 subunit zeta (58 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit beta (57 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit eta (59 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit gamma (60 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit epsilon (59 kDa, Protein from Homo sapiens)
- Tubulin beta chain (49 kDa, Protein from Homo sapiens)
- Aluminum fluoride (83 Da, Ligand)
- T-complex protein 1 subunit theta (59 kDa, Protein from Homo sapiens)
- Human tric-tubulin-s3 (Complex from Homo sapiens)
- T-complex protein 1 subunit delta (57 kDa, Protein from Homo sapiens)
cryo-EM structure of human TRiC-ADP-AlFx
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7x0v
Q-score: 0.439
Liu C, Jin M, Wang S, Han W, Zhao Q, Wang Y, Xu C, Diao L, Yin Y, Peng C, Bao L, Wang Y, Cong Y
Commun Biol (2023) 6 pp. 531-531 [ Pubmed: 37193829 DOI: doi:10.1038/s42003-023-04915-x ]
- Water (18 Da, Ligand)
- T-complex protein 1 subunit zeta (58 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit beta (57 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit eta (59 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit gamma (60 kDa, Protein from Homo sapiens)
- Human tric-adp-alfx (Complex from Homo sapiens)
- T-complex protein 1 subunit epsilon (59 kDa, Protein from Homo sapiens)
- Aluminum fluoride (83 Da, Ligand)
- T-complex protein 1 subunit theta (59 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- T-complex protein 1 subunit delta (57 kDa, Protein from Homo sapiens)
yeast TRiC-plp2-tubulin complex at S3 closed TRiC state
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 7ylw
Q-score: 0.318
Han W, Jin M, Liu C, Zhao Q, Wang S, Wang Y, Yin Y, Peng C, Wang Y, Cong Y
Sci Adv (2023) 9 pp. eade1207-eade1207 [ DOI: doi:10.1126/sciadv.ade1207 Pubmed: 36921056 ]
- T-complex protein 1 subunit eta (59 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- Tric, tubulin beta chain (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit theta (61 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit beta (57 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit epsilon (61 kDa, Protein from Saccharomyces cerevisiae)
- Yeast tric-plp2-tubulin complex at c3 closed tric state (Complex from Saccharomyces cerevisiae)
- Phosducin-like protein 2 (32 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- T-complex protein 1 subunit zeta (59 kDa, Protein from Saccharomyces cerevisiae)
- Tubulin beta chain (50 kDa, Protein from Saccharomyces cerevisiae)
- Aluminum fluoride (83 Da, Ligand)
- T-complex protein 1 subunit delta (57 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit gamma (65 kDa, Protein from Saccharomyces cerevisiae)
- Plp2 (Complex)
- Adenosine-5'-diphosphate (427 Da, Ligand)
yeast TRiC-plp2-actin complex at S4 closed TRiC state
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7ylx
Q-score: 0.353
Han W, Jin M, Liu C, Zhao Q, Wang S, Wang Y, Yin Y, Peng C, Wang Y, Cong Y
Sci Adv (2023) 9 pp. eade1207-eade1207 [ DOI: doi:10.1126/sciadv.ade1207 Pubmed: 36921056 ]
- T-complex protein 1 subunit eta (59 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- T-complex protein 1 subunit theta (61 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit beta (57 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit epsilon (61 kDa, Protein from Saccharomyces cerevisiae)
- Tric (Complex from Saccharomyces cerevisiae)
- Phosducin-like protein 2 (32 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit zeta (59 kDa, Protein from Saccharomyces cerevisiae)
- Aluminum fluoride (83 Da, Ligand)
- T-complex protein 1 subunit delta (57 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit gamma (65 kDa, Protein from Saccharomyces cerevisiae)
- Plp2 (Complex)
- Yeast tric-plp2-actin complex at c4 closed tric state (Complex from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
yeast TRiC-plp2 complex at S5 closed TRiC state
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7yly
Q-score: 0.354
Han W, Jin M, Liu C, Zhao Q, Wang S, Wang Y, Yin Y, Peng C, Wang Y, Cong Y
Sci Adv (2023) 9 pp. eade1207-eade1207 [ DOI: doi:10.1126/sciadv.ade1207 Pubmed: 36921056 ]
- T-complex protein 1 subunit eta (59 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- Tric-plp2 complex at c5 closed tric state (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit theta (61 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit beta (57 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit epsilon (61 kDa, Protein from Saccharomyces cerevisiae)
- Tric (Complex from Saccharomyces cerevisiae)
- Phosducin-like protein 2 (32 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit zeta (59 kDa, Protein from Saccharomyces cerevisiae)
- Aluminum fluoride (83 Da, Ligand)
- T-complex protein 1 subunit delta (57 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit gamma (65 kDa, Protein from Saccharomyces cerevisiae)
- Plp2 (Complex)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Cryo-EM structure of the Serotonin 6 (5-HT6) receptor-DNGs-scFv16 complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ys6
Q-score: 0.429
He L, Zhao QY, Qi J, Wang Y, Han W, Chen Z, Cong Y, Wang S
PNAS (2023) 120 pp. e2209917120-e2209917120 [ DOI: doi:10.1073/pnas.2209917120 Pubmed: 36989299 ]
- 5-hydroxytryptamine receptor 6 (33 kDa, Protein from Homo sapiens)
- Isoform gnas-2 of guanine nucleotide-binding protein g(s) subunit alpha isoforms short (43 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Serotonin (176 Da, Ligand)
- Serotonin 6 (5-ht6) receptor-dngs-scfv16 complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Scfv16 (28 kDa, Protein from Mus musculus)