RNA polymerase I Initial Transcribing Complex State 2
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 5w65
Q-score: 0.336
Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y
eLife (2017) 6 [ DOI: doi:10.7554/eLife.27414 Pubmed: 28623663 ]
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna (1 kDa, RNA from Saccharomyces cerevisiae S288c)
- Zinc ion (65 Da, Ligand)
- Template strand dna (16 kDa, DNA from Saccharomyces cerevisiae S288c)
- Rna polymerase i-specific transcription initiation factor rrn6 (100 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Non-template strand dna (16 kDa, DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i initial transcribing complex state 2 (900 kDa, Complex from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
RNA polymerase I Initial Transcribing Complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5w5y
Q-score: 0.337
Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y
eLife (2017) 6 [ DOI: doi:10.7554/eLife.27414 Pubmed: 28623663 ]
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna (1 kDa, RNA from Saccharomyces cerevisiae S288c)
- Rna polymerase i initial transcribing complex (900 kDa, Complex from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Non-template strand dna (16 kDa, DNA from Saccharomyces cerevisiae S288c)
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn6 (100 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Template strand dna (16 kDa, DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
RNA Polymerase I Initial Transcribing Complex State 1
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 5w64
Q-score: 0.276
Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y
eLife (2017) 6 [ DOI: doi:10.7554/eLife.27414 Pubmed: 28623663 ]
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i initial transcribing complex state 1 (900 kDa, Complex from Saccharomyces cerevisiae S288c)
- Rna (1 kDa, RNA from Saccharomyces cerevisiae S288c)
- Rna polymerase i-specific transcription initiation factor rrn6 (100 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Template strand dna (16 kDa, DNA from Saccharomyces cerevisiae S288c)
- Non-template strand dna (16 kDa, DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
RNA polymerase I Initial Transcribing Complex State 3
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5w66
Q-score: 0.286
Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y
eLife (2017) 6 [ DOI: doi:10.7554/eLife.27414 Pubmed: 28623663 ]
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna (1 kDa, RNA from Saccharomyces cerevisiae S288c)
- Zinc ion (65 Da, Ligand)
- Template strand dna (16 kDa, DNA from Saccharomyces cerevisiae S288c)
- Rna polymerase i-specific transcription initiation factor rrn6 (100 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Non-template strand dna (16 kDa, DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i initial transcribing complex state 3 (900 kDa, Complex from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Core Factor local refinement from Pol I Initial Transcribing Complex at 4.2 angstrom
Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y
eLife (2017) 6 [ DOI: doi:10.7554/eLife.27414 Pubmed: 28623663 ]
- Template dna (DNA from Saccharomyces cerevisiae S288c)
- Non-template strand dna (DNA from Saccharomyces cerevisiae S288c)
- Rrn11 (Protein from Saccharomyces cerevisiae S288c)
- Yeast core factor (250 kDa, Complex from Saccharomyces cerevisiae S288c)
- Rrn7 (Protein from Saccharomyces cerevisiae S288c)
- Rrn6 (Protein from Saccharomyces cerevisiae S288c)
Pol I local refinement from Pol I Initial Transcribing Complex at 3.7 angstrom
Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y
eLife (2017) 6 [ DOI: doi:10.7554/eLife.27414 Pubmed: 28623663 ]
- Dna-directed rna polymerase i subunit rpa43 (Protein from Saccharomyces cerevisiae S288c)
- Non-template strand dna (DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa14 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (Protein from Saccharomyces cerevisiae S288c)
- Template strand dna (DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa34 (Protein from Saccharomyces cerevisiae S288c)
- Pol i local refinement from rna polymerase i initial transcribing complex (700 kDa, Complex from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (Protein from Saccharomyces cerevisiae S288c)
- Rna (RNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i and iii subunit rpac1 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa12 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa135 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i and iii subunit rpac2 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa49 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa190 (Protein from Saccharomyces cerevisiae S288c)
Pol I Initial Transcribing Complex with a truncated scaffold at 6.9 angstrom
Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y
eLife (2017) 6 [ DOI: doi:10.7554/eLife.27414 Pubmed: 28623663 ]
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (Protein from Saccharomyces cerevisiae S288c)
- Template strand dna (DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa14 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa12 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i and iii subunit rpac2 (Protein from Saccharomyces cerevisiae S288c)
- Rna polymerase i initial transcribing complex with a truncated scaffold (900 kDa, Complex from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa43 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa34 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (Protein from Saccharomyces cerevisiae S288c)
- Upstream non-template strand dna (DNA from Saccharomyces cerevisiae S288c)
- Downstream non-template strand dna (DNA from Saccharomyces cerevisiae S288c)
- Rna polymerase i-specific transcription initiation factor rrn11 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa135 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa49 (Protein from Saccharomyces cerevisiae S288c)
- Rna polymerase i-specific transcription initiation factor rrn7 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (Protein from Saccharomyces cerevisiae S288c)
- Rna (RNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i and iii subunit rpac1 (Protein from Saccharomyces cerevisiae S288c)
- Rna polymerase i-specific transcription initiation factor rrn6 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa190 (Protein from Saccharomyces cerevisiae S288c)