CryoEM structure of bacterial RapZ.GlmZ complex central to the control of cell envelope biogenesis
Resolution: 4.28 Å
EM Method: Single-particle
Fitted PDBs: 8b0i
Q-score: 0.277
Islam MS, Hardwick SW, Quell L, Durica-Mitic S, Chirgadze DY, Gorke B, Luisi BF
EMBO J (2023) 42 pp. e112574-e112574 [ DOI: doi:10.15252/embj.2022112574 Pubmed: 36504162 ]
- Rnase adapter protein rapz (32 kDa, Protein from Escherichia coli K-12)
- Glmz small regulatory rna (66 kDa, RNA from Escherichia coli K-12)
- Rapz tetramer, glmz stem loops i & ii (Complex from Escherichia coli)
Resolution: 3.99 Å
EM Method: Single-particle
Fitted PDBs: 8b0j
Q-score: 0.319
Islam MS, Hardwick SW, Quell L, Durica-Mitic S, Chirgadze DY, Gorke B, Luisi BF
EMBO J (2023) 42 pp. e112574-e112574 [ DOI: doi:10.15252/embj.2022112574 Pubmed: 36504162 ]
- Ribonuclease e (64 kDa, Protein from Escherichia coli K-12)
- Rnase adapter protein rapz (32 kDa, Protein from Escherichia coli K-12)
- Glmz small rna (66 kDa, RNA from Escherichia coli K-12)
- Rapz tetramer, glmz stem loops i & ii (Complex from Escherichia coli)
Cryo-EM of Aedes Aegypti Toll5A dimer bound to Spz1C
Resolution: 4.23 Å
EM Method: Single-particle
Fitted PDBs: 7b1b
Q-score: 0.295
Saucereau Y, Wilson TH, Tang MCK, Moncrieffe MC, Hardwick SW, Chirgadze DY, Soares SG, Marcaida MJ, Gay NJ, Gangloff M
Nat Commun (2022) 13 pp. 5110-5110 [ Pubmed: 36042238 DOI: doi:10.1038/s41467-022-32690-6 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Aael013433-pa (Complex from Aedes aegypti)
- Cryo-em of aedes aegypti toll5a dimer bound to spz1c (230 kDa, Complex)
- Aael013433-pa (12 kDa, Protein from Aedes aegypti)
- Toll-like receptor (Complex from Aedes aegypti)
- Toll-like receptor (87 kDa, Protein from Aedes aegypti)
Cryo-EM of Aedes Aegypti Toll5A trimer bound to Spz1C
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 7b1c
Q-score: 0.358
Saucereau Y, Wilson TH, Tang MCK, Moncrieffe MC, Hardwick SW, Chirgadze DY, Soares SG, Marcaida MJ, Gay NJ, Gangloff M
Nat Commun (2022) 13 pp. 5110-5110 [ Pubmed: 36042238 DOI: doi:10.1038/s41467-022-32690-6 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Aael013433-pa (Complex from Aedes aegypti)
- Toll5a-spz1c complex (230 MDa, Complex)
- Aael013433-pa (12 kDa, Protein from Aedes aegypti)
- Toll-like receptor (Complex from Aedes aegypti)
- Toll-like receptor (87 kDa, Protein from Aedes aegypti)
Cryo-EM of Aedes Aegypti Toll5A
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 7b1d
Q-score: 0.416
Saucereau Y, Wilson TH, Tang MCK, Moncrieffe MC, Hardwick SW, Chirgadze DY, Soares SG, Marcaida MJ, Gay NJ, Gangloff M
Nat Commun (2022) 13 pp. 5110-5110 [ Pubmed: 36042238 DOI: doi:10.1038/s41467-022-32690-6 ]
- Toll5a-spz1c complex (230 MDa, Complex from Aedes aegypti)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Toll-like receptor (87 kDa, Protein from Aedes aegypti)
Cryo-EM structure of human exostosin-like 3 (EXTL3)
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 7au2
Q-score: 0.659
Wilson LFL, Dendooven T, Hardwick SW, Echevarria-Poza A, Tryfona T, Krogh KBRM, Chirgadze DY, Luisi BF, Logan DT, Mani K, Dupree P
Nat Commun (2022) 13 pp. 3314-3314 [ Pubmed: 35676258 DOI: doi:10.1038/s41467-022-31048-2 ]
- Exostosin-like 3 (101 kDa, Protein from Homo sapiens)
- Homodimer of extl3 globular domain (170 kDa, Complex from Homo sapiens)
Cryo-EM structure of human exostosin-like 3 (EXTL3) in complex with UDP
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 7aua
Q-score: 0.574
Wilson LFL, Dendooven T, Hardwick SW, Echevarria-Poza A, Tryfona T, Krogh KBRM, Chirgadze DY, Luisi BF, Logan DT, Mani K, Dupree P
Nat Commun (2022) 13 pp. 3314-3314 [ Pubmed: 35676258 DOI: doi:10.1038/s41467-022-31048-2 ]
- Exostosin-like 3 (101 kDa, Protein from Homo sapiens)
- Homodimer of extl3 globular domain (170 kDa, Complex from Homo sapiens)
- Manganese (ii) ion (54 Da, Ligand)
- Uridine-5'-diphosphate (404 Da, Ligand)
Human methemoglobin bound to Staphylococcus aureus hemophore IsdB
Resolution: 5.82 Å
EM Method: Single-particle
Fitted PDBs: 7pcf
Q-score: 0.246
De Bei O, Marchetti M, Ronda L, Gianquinto E, Lazzarato L, Chirgadze DY, Hardwick SW, Cooper LR, Spyrakis F, Luisi BF, Campanini B, Bettati S
PNAS (2022) 119 pp. e2116708119-e2116708119 [ Pubmed: 35357971 DOI: doi:10.1073/pnas.2116708119 ]
- Iron-regulated surface determinant protein b (Complex from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Iron-regulated surface determinant protein b (43 kDa, Protein from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Human methemoglobin bound to staphylococcus aureus hemophore isdb (119 kDa, Complex)
- Hemoglobin (Complex from Homo sapiens)
Human carboxyhemoglobin bound to Staphylococcus aureus hemophore IsdB - 1:2 complex
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7pch
Q-score: 0.491
De Bei O, Marchetti M, Ronda L, Gianquinto E, Lazzarato L, Chirgadze DY, Hardwick SW, Cooper LR, Spyrakis F, Luisi BF, Campanini B, Bettati S
PNAS (2022) 119 pp. e2116708119-e2116708119 [ Pubmed: 35357971 DOI: doi:10.1073/pnas.2116708119 ]
- Iron-regulated surface determinant protein b (Complex from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Iron-regulated surface determinant protein b (43 kDa, Protein from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Hemoglobin (Complex from Homo sapiens)
- Water (18 Da, Ligand)
- Human carboxyhemoglobin bound to staphylococcus aureus hemophore isdb - 1:2 complex (151 kDa, Complex)
Human carboxyhemoglobin bound to Staphylococcus aureus hemophore IsdB - 1:1 complex
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 7pcq
Q-score: 0.322
De Bei O, Marchetti M, Ronda L, Gianquinto E, Lazzarato L, Chirgadze DY, Hardwick SW, Cooper LR, Spyrakis F, Luisi BF, Campanini B, Bettati S
PNAS (2022) 119 pp. e2116708119-e2116708119 [ Pubmed: 35357971 DOI: doi:10.1073/pnas.2116708119 ]
- Iron-regulated surface determinant protein b (Complex from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Iron-regulated surface determinant protein b (43 kDa, Protein from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Human carboxyhemoglobin bound to staphylococcus aureus hemophore isdb - 1:1 complex (108 kDa, Complex)
- Hemoglobin (Complex from Homo sapiens)