Structure of the AcMNPV baculovirus VP39 nucleocapsid (C14 helical reconstruction)
Johnstone BA, Hardy JM, Ha J, Butkovic A, Koszalka P, Accurso C, Venugopal H, de Marco A, Krupovic M, Coulibaly F
Sci Adv (2024) 10 pp. eado2631-eado2631 [ Pubmed: 39693434 DOI: doi:10.1126/sciadv.ado2631 ]
- C14 reconstruction of the helical portion of the nucleocapsid formed by dimers of vp39 (Complex from Autographa californica multiple nucleopolyhedrovirus)
- Autographa californica multiple nucleopolyhedrovirus (126 MDa, Virus from Autographa californica multiple nucleopolyhedrovirus)
- Major nucleocapsid protein vp39 of autographa californica multiple nucleopolyhedrovirus (Protein from Autographa californica multiple nucleopolyhedrovirus)
Structure of the baculovirus major nucleocapsid protein VP39 (localised reconstruction)
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8vwh
Q-score: 0.491
Johnstone BA, Hardy JM, Ha J, Butkovic A, Koszalka P, Accurso C, Venugopal H, de Marco A, Krupovic M, Coulibaly F
To Be Published
Johnstone BA, Hardy JM, Ha J, Butkovic A, Koszalka P, Accurso C, Venugopal H, de Marco M, Krupovic M, Coulibaly F
To Be Published
The base complex of the AcMNPV baculovirus nucleocapsid (Class 1, localised reconstruction)
Resolution: 4.71 Å
EM Method: Single-particle
Fitted PDBs: 8vwi
Q-score: 0.252
Johnstone BA, Hardy JM, Ha J, Butkovic A, Koszalka P, Accurso C, Venugopal H, de Marco A, Krupovic M, Coulibaly F
To Be Published
- 38k (ac98) protein in p143-lef5 intergenic region (38 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein c42 (41 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Autographa californica multiple nucleopolyhedrovirus (Virus from Autographa californica multiple nucleopolyhedrovirus)
- Occlusion-derived virus envelope protein e27 (33 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Major capsid protein (38 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Zinc ion (65 Da, Ligand)
- Capsid-associated protein vp80 (79 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein ac109 (44 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein ac142 (55 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
The base complex of the AcMNPV baculovirus nucleocapsid (Class 2, localised reconstruction)
Resolution: 4.78 Å
EM Method: Single-particle
Fitted PDBs: 8vwj
Q-score: 0.243
Johnstone BA, Hardy JM, Ha J, Butkovic A, Koszalka P, Accurso C, Venugopal H, de Marco A, Krupovic M, Coulibaly F
To Be Published
- 38k (ac98) (38 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein c42 (41 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Autographa californica multiple nucleopolyhedrovirus (Virus from Autographa californica multiple nucleopolyhedrovirus)
- Occlusion-derived virus envelope protein e27 (33 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Major capsid protein (38 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Zinc ion (65 Da, Ligand)
- Capsid-associated protein vp80 (79 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein ac109 (44 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein ac142 (55 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
Johnstone BA, Hardy JM, Ha J, Butkovic A, Koszalka P, Accurso C, Venugopal H, de Marco A, Krupovic M, Coulibaly F
To Be Published
Binjari virus (BinJV) complexed with pr-specific Fab 2A7
Newton ND, Hardy JM, Modhiran N, Hugo LE, Amarilla AA, Bibby S, Venugopal H, Harrison JJ, Traves RJ, Hall RA, Hobson-Peters J, Coulibaly F, Watterson D
Sci Adv (2021) 7 [ Pubmed: 33990320 DOI: doi:10.1126/sciadv.abe4507 ]
- Binjari virus (22 MDa, Virus from Binjari virus)
- 2a7 fab (50 kDa, Complex from Mus musculus)
- Binjari virus complexed with pr-specific fab 2a7 (22 MDa, Complex)
The structure of an infectious immature flavivirus redefines viral architecture and maturation
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7l30
Q-score: 0.418
Newton ND, Hardy JM, Modhiran N, Hugo LE, Amarilla AA, Bibby S, Venugopal H, Harrison JJ, Traves RJ, Hall RA, Hobson-Peters J, Coulibaly F, Watterson D
Sci Adv (2021) 7 [ Pubmed: 33990320 DOI: doi:10.1126/sciadv.abe4507 ]
- Binjari virus (22 MDa, Virus from Binjari virus)
- Prm protein (18 kDa, Protein from Binjari virus)
- Envelope protein e (53 kDa, Protein from Binjari virus)
Chimeric flavivirus between Binjari virus and Dengue virus serotype-2
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7kv8
Q-score: 0.701
Hardy JM, Newton ND, Modhiran N, Scott CAP, Venugopal H, Vet LJ, Young PR, Hall RA, Hobson-Peters J, Coulibaly F, Watterson D
Nat Commun (2021) 12 pp. 3266-3266 [ DOI: doi:10.1038/s41467-021-22773-1 Pubmed: 34075032 ]
- [(2~{r})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{z})-octadec-9-enoate (717 Da, Ligand)
- Water (18 Da, Ligand)
- Binjari virus (11 MDa, Virus from Binjari virus)
- M and e from dengue virus serotype-2 isolate et300 form a complex that assembles into anti-parallel dimers, (m-e)2, in the t=3 icosahedral particle. (Complex from Dengue virus 2)
- Envelope protein e (54 kDa, Protein from Dengue virus 2)
- (2s,3r,4z)-3-hydroxy-2-[(9e)-octadec-9-enoylamino]octadec-4-en-1-yl dihydrogen phosphate (643 Da, Ligand)
- Matrix protein m (8 kDa, Protein from Dengue virus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)