Structure of an archaeal ABCE1-bound ribosomal post-splitting complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6tmf
Q-score: 0.583
Nurenberg-Goloub E, Kratzat H, Heinemann H, Heuer A, Kotter P, Berninghausen O, Becker T, Tampe R, Beckmann R
EMBO J (2020) 39 pp. e103788-e103788 [ DOI: doi:10.15252/embj.2019103788 Pubmed: 32064661 ]
- 30s ribosomal protein s4e (27 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s13 (15 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 16s ribosomal rna (482 kDa, RNA from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s8 (14 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s3ae (21 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s3 (21 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s24e (11 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s15 (17 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s19e (17 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- Atpase (67 kDa, Protein from Saccharolobus solfataricus)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s27ae (5 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- Iron/sulfur cluster (351 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s19p (13 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s11 (14 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- Lsu ribosomal protein l41e (5 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s small ribosomal subunit (Complex from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s6e (13 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- 30s ribosomal protein s5 (24 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s12 (16 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s7 (24 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- Rna-binding protein (6 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s abce1 post-splitting complex (Complex)
- 30s ribosomal protein s4 (20 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s27e (6 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s2 (22 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 50s ribosomal protein l7ae (13 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s28e (7 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s8e (14 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- 30s ribosomal protein s17e (7 kDa, Protein from Thermococcus celer Vu 13 = JCM 8558)
- Abce1 (Complex from Saccharolobus solfataricus)
Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6eml
Q-score: 0.371
Heuer A, Thomson E, Schmidt C, Berninghausen O, Becker T, Hurt E, Beckmann R
eLife (2017) 6 [ Pubmed: 29155690 DOI: doi:10.7554/eLife.30189 ]
Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6enf
Q-score: 0.459
Huter P, Arenz S, Bock LV, Graf M, Frister JO, Heuer A, Peil L, Starosta AL, Wohlgemuth I, Peske F, Novacek J, Berninghausen O, Grubmuller H, Tenson T, Beckmann R, Rodnina MV, Vaiana AC, Wilson DN
Mol Cell (2017) 68 pp. 515-527.e6 [ DOI: doi:10.1016/j.molcel.2017.10.014 Pubmed: 29100052 ]
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- Rna (5'-r(p*cp*cp*g)-3'), mrna (910 Da, RNA from Escherichia coli)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- Proline trna (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Polyproline stalled ribosome in the absence of elongation factor p (3 MDa, Complex from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6enj
Q-score: 0.385
Huter P, Arenz S, Bock LV, Graf M, Frister JO, Heuer A, Peil L, Starosta AL, Wohlgemuth I, Peske F, Novacek J, Berninghausen O, Grubmuller H, Tenson T, Beckmann R, Rodnina MV, Vaiana AC, Wilson DN
Mol Cell (2017) 68 pp. 515-527.e6 [ DOI: doi:10.1016/j.molcel.2017.10.014 Pubmed: 29100052 ]
- Proline (115 Da, Ligand)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l1 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- Mrna (2 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- Polyproline-stalled ribosome in the presence of a+p site trna and elongation-factor p (ef-p) (3 MDa, Complex from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- Elongation factor p (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- Proline trna (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
Polyproline stalled ribosome without EF-P
Huter P, Arenz S, Bock LV, Graf M, Frister JO, Heuer A, Peil L, Starosta AL, Wohlgemuth I, Peske F, Novacek J, Berninghausen O, Grubmuller H, Tenson T, Beckmann R, Rodnina MV, Vaiana AC, Wilson DN
Mol Cell (2017) 68 pp. 515-527.e6 [ DOI: doi:10.1016/j.molcel.2017.10.014 Pubmed: 29100052 ]
Polyproline-stalled ribosome with distorted A-site and P-site tRNA
Huter P, Arenz S, Bock LV, Graf M, Frister JO, Heuer A, Peil L, Starosta AL, Wohlgemuth I, Peske F, Novacek J, Berninghausen O, Grubmuller H, Tenson T, Beckmann R, Rodnina MV, Vaiana AC, Wilson DN
Mol Cell (2017) 68 pp. 515-527.e6 [ DOI: doi:10.1016/j.molcel.2017.10.014 Pubmed: 29100052 ]
Polyproline-stalled ribosome with a truncated mRNA in the A-site.
Huter P, Arenz S, Bock LV, Graf M, Frister JO, Heuer A, Peil L, Starosta AL, Wohlgemuth I, Peske F, Novacek J, Berninghausen O, Grubmuller H, Tenson T, Beckmann R, Rodnina MV, Vaiana AC, Wilson DN
Mol Cell (2017) 68 pp. 515-527.e6 [ DOI: doi:10.1016/j.molcel.2017.10.014 Pubmed: 29100052 ]
Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6enu
Q-score: 0.524
Huter P, Arenz S, Bock LV, Graf M, Frister JO, Heuer A, Peil L, Starosta AL, Wohlgemuth I, Peske F, Novacek J, Berninghausen O, Grubmuller H, Tenson T, Beckmann R, Rodnina MV, Vaiana AC, Wilson DN
Mol Cell (2017) 68 pp. 515-527.e6 [ DOI: doi:10.1016/j.molcel.2017.10.014 Pubmed: 29100052 ]
- Proline (115 Da, Ligand)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l1 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- Mrna (1 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- Elongation factor p (20 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Polyproline stalled ribosome in the absence of elongation factor p (3 MDa, Complex from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- Proline trna (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
Heuer A, Gerovac M, Schmidt C, Trowitzsch S, Preis A, Kotter P, Berninghausen O, Becker T, Beckmann R, Tampe R
Nat Struct Mol Biol (2017) 24 pp. 453-460 [ Pubmed: 28368393 DOI: doi:10.1038/nsmb.3396 ]
- Native 40s-abce1 complex (1 MDa, Complex from Saccharomyces cerevisiae)
Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5ll6
Q-score: 0.348
Heuer A, Gerovac M, Schmidt C, Trowitzsch S, Preis A, Kotter P, Berninghausen O, Becker T, Beckmann R, Tampe R
Nat Struct Mol Biol (2017) 24 pp. 453-460 [ Pubmed: 28368393 DOI: doi:10.1038/nsmb.3396 ]
- 40s-abce1 complex (1 MDa, Complex from Saccharomyces cerevisiae)