Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7axz
Q-score: 0.446
Hnizda A, Tesina P, Nguyen TB, Kukacka Z, Kater L, Chaplin AK, Beckmann R, Ascher DB, Novak P, Blundell TL
FEBS J (2021) 288 pp. 4382-4393 [ DOI: doi:10.1111/febs.15732 Pubmed: 33511782 ]
- Ku70/80 complex (Complex from Homo sapiens)
- X-ray repair cross-complementing protein 6 (69 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
Cryo-EM structure of DNA-PKcs (State 2)
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 6zfp
Q-score: 0.472
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ Pubmed: 33077952 DOI: doi:10.1038/s41594-020-00517-x ]
- Dna-pkcs (470 kDa, Cellular component from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-pkcs,dna-pkcs (472 kDa, Protein from Homo sapiens)
Cryo-EM structure of DNA-PKcs (State 1)
Resolution: 3.92 Å
EM Method: Single-particle
Fitted PDBs: 6zh2
Q-score: 0.379
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ Pubmed: 33077952 DOI: doi:10.1038/s41594-020-00517-x ]
- Dna-pkcs (state 1) (470 kDa, Cellular component from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
Cryo-EM structure of DNA-PKcs (State 3)
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 6zh4
Q-score: 0.398
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ Pubmed: 33077952 DOI: doi:10.1038/s41594-020-00517-x ]
- Dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
- Dna-pkcs (470 kDa, Cellular component from Homo sapiens)
Cryo-EM structure of DNA-PKcs:Ku80ct194
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 6zh6
Q-score: 0.335
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ Pubmed: 33077952 DOI: doi:10.1038/s41594-020-00517-x ]
- Dna-dependent protein kinase catalytic subunit,dna-pkcs (Cellular component from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (21 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (Cellular component from Homo sapiens)
- Dna-pkcs in complex with ku80 c-terminal domain (480 kDa, Cellular component)
Cryo-EM structure of DNA-PKcs:DNA
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 6zh8
Q-score: 0.277
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ Pubmed: 33077952 DOI: doi:10.1038/s41594-020-00517-x ]
- Dna (Cellular component from Homo sapiens)
- Dna-pkcs (Cellular component from Homo sapiens)
- Dna (5'-d(p*ap*gp*tp*tp*tp*tp*tp*ap*gp*tp*t)-3') (3 kDa, DNA from Homo sapiens)
- Dna-pkcs bound to dna (480 kDa, Cellular component)
- Dna (5'-d(p*ap*cp*tp*ap*ap*ap*ap*a)-3') (2 kDa, DNA from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
Cryo-EM structure of DNA-PK monomer
Resolution: 3.91 Å
EM Method: Single-particle
Fitted PDBs: 6zha
Q-score: 0.338
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ Pubmed: 33077952 DOI: doi:10.1038/s41594-020-00517-x ]
- X-ray repair cross-complementing protein 5+6 (Complex from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit (Complex from Homo sapiens)
- Dna-pk monomer (640 kDa, Complex)
- X-ray repair cross-complementing protein 6 (69 kDa, Protein from Homo sapiens)
- Dna (7 kDa, DNA from Homo sapiens)
- Dna (7 kDa, DNA from Homo sapiens)
- Dna (Complex from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
Cryo-EM structure of DNA-PK dimer
Resolution: 7.24 Å
EM Method: Single-particle
Fitted PDBs: 6zhe
Q-score: 0.195
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ Pubmed: 33077952 DOI: doi:10.1038/s41594-020-00517-x ]
- Dna (26-mer) (8 kDa, DNA from Homo sapiens)
- Dna (Cellular component from Homo sapiens)
- Dna (25-mer) (7 kDa, DNA from Homo sapiens)
- Dna (28-mer) (8 kDa, DNA from Homo sapiens)
- X-ray repair cross-complementing protein 6 (69 kDa, Protein from Homo sapiens)
- Dna-pk dimer (1 MDa, Cellular component)
- X-ray repair cross-complementing proteins 5 and 6 (Cellular component from Homo sapiens)
- Dna (27-mer) (8 kDa, DNA from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit (Cellular component from Homo sapiens)