III2-IV2 respiratory supercomplex from Corynebacterium glutamicum
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7q21
Q-score: 0.571
Moe A, Kovalova T, Krol S, Yanofsky DJ, Bott M, Sjostrand D, Rubinstein JL, Hogbom M, Brzezinski P
Structure (2022) 30 pp. 338- [ DOI: doi:10.1016/j.str.2021.11.008 Pubmed: 34910901 ]
- Heme c (618 Da, Ligand)
- Cytochrome c oxidase subunit 3 (22 kDa, Protein from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025))
- Cytochrome bc1 complex rieske iron-sulfur subunit (45 kDa, Protein from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025))
- Tridecane (184 Da, Ligand)
- Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025))
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome c oxidase subunit 1 (66 kDa, Protein from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025))
- Uncharacterized membrane protein cgl2017/cg2211 (16 kDa, Protein from Corynebacterium glutamicum ATCC 13032)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome c oxidase subunit 2 (39 kDa, Protein from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025))
- Actinobacterial supercomplex, subunit c (ascc) (8 kDa, Protein from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025))
- Docosane (310 Da, Ligand)
- The respiratory supercomplex (Complex from Corynebacterium glutamicum ATCC 13032)
- Menaquinone-9 (785 Da, Ligand)
- Co-purified unknown transmembrane helices built as polyala (ascd) (8 kDa, Protein from Corynebacterium glutamicum ATCC 13032)
- Heme-as (920 Da, Ligand)
- Hypothetical membrane protein (6 kDa, Protein from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025))
- Co-purified unknown peptide built as polyala (asce) (1 kDa, Protein from Corynebacterium glutamicum ATCC 13032)
- Cytochrome bc1 complex cytochrome b subunit (59 kDa, Protein from Corynebacterium glutamicum ATCC 13032)
- Palmitic acid (256 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Uncharacterized protein cgl2664/cg2949 (20 kDa, Protein from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025))
- (2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
- (2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
- Cytochrome bc1 complex cytochrome c subunit (29 kDa, Protein from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025))
- Calcium ion (40 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Co-purified unknown peptide built as polyala (asce) (1 kDa, Protein from Corynebacterium glutamicum ATCC 13032)
- (1r)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate (564 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
CryoEM structure of the ABC transporter BmrA E504A mutant in complex with ATP-Mg
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ow8
Q-score: 0.437
Chaptal V, Zampieri V, Wiseman B, Orelle C, Martin J, Nguyen KA, Gobet A, Di Cesare M, Magnard S, Javed W, Eid J, Kilburg A, Peuchmaur M, Marcoux J, Monticelli L, Hogbom M, Schoehn G, Jault JM, Boumendjel A, Falson P
Sci Adv (2022) 8 pp. eabg9215-eabg9215 [ Pubmed: 35080979 DOI: doi:10.1126/sciadv.abg9215 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Multidrug resistance abc transporter atp-binding/permease protein bmra (65 kDa, Protein from Bacillus subtilis (strain 168))
- Magnesium ion (24 Da, Ligand)
- Complex of bmra with atp-mg (130 kDa, Complex from Bacillus subtilis)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7bg4
Q-score: 0.309
Chaptal V, Zampieri V, Wiseman B, Orelle C, Martin J, Nguyen KA, Gobet A, Di Cesare M, Magnard S, Javed W, Eid J, Kilburg A, Peuchmaur M, Marcoux J, Monticelli L, Hogbom M, Schoehn G, Jault JM, Boumendjel A, Falson P
Sci Adv (2022) 8 pp. eabg9215-eabg9215 [ DOI: doi:10.1126/sciadv.abg9215 Pubmed: 35080979 ]
- Multidrug resistance abc transporter atp-binding/permease protein bmra (65 kDa, Protein from Bacillus subtilis)
- Multidrug resistance transporter from bacillus subtilis bound with atp, mg, and rhodamine 6g. (Complex from Bacillus subtilis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Rhodamine 6g (443 Da, Ligand)
full-length bacterial polysaccharide co-polymerase - C8 symmetry
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6rbg
Q-score: 0.516
Wiseman B, Nitharwal RG, Widmalm G, Hogbom M
Nat Commun (2021) 12 pp. 369-369 [ Pubmed: 33446644 DOI: doi:10.1038/s41467-020-20579-1 ]
Structure of a functional obligate respiratory supercomplex from Mycobacterium smegmatis
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6hwh
Q-score: 0.5
Wiseman B, Nitharwal RG, Fedotovskaya O, Schafer J, Guo H, Kuang Q, Benlekbir S, Sjostrand D, Adelroth P, Rubinstein JL, Brzezinski P, Hogbom M
Nat Struct Mol Biol (2018) 25 pp. 1128-1136 [ DOI: doi:10.1038/s41594-018-0160-3 Pubmed: 30518849 ]
- Menaquinone-9 (785 Da, Ligand)
- Msmeg_4693 (8 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Cytochrome c oxidase subunit 3 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Co-purified unknown peptide built as polyala (1 kDa, Protein from Mycobacterium smegmatis MC2 155)
- Ubiquinol-cytochrome c reductase iron-sulfur subunit (44 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Co-purified unknown transmembrane helices built as polyala (6 kDa, Protein from Mycobacterium smegmatis MC2 155)
- Cytochrome bc1 complex cytochrome c subunit (27 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Ubiquinol-cytochrome c reductase qcrb (61 kDa, Protein from Mycobacterium smegmatis MC2 155)
- Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Uncharacterized protein msmeg_4692/msmei_4575 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Respiratory supercomplex from mycobacterium smegmatis (770 kDa, Complex from Mycobacterium smegmatis str. MC2 155)
- Cytochrome c oxidase subunit 1 (64 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Heme-as (920 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Co-purified unknown peptide built as polyala (2 kDa, Protein from Mycobacterium smegmatis MC2 155)
- Cytochrome c oxidase subunit 2 (38 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Heme c (618 Da, Ligand)
- Co-purified unknown transmembrane helices built as polyala (5 kDa, Protein from Mycobacterium smegmatis MC2 155)
- Copper (ii) ion (63 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)