Cryo-EM structure of the yeast TOM core complex crosslinked by BS3 (from TOM-TIM23 complex)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8w5k
Q-score: 0.436
Wang Q, Zhuang J, Huang R, Guan Z, Yan L, Hong S, Zhang L, Huang C, Liu Z, Yin P
Cell Discov (2024) 10 pp. 19-19 [ Pubmed: 38360717 DOI: doi:10.1038/s41421-023-00643-y ]
- Mitochondrial import receptor subunit tom40 (42 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Tom-tim23 complex (Complex from Saccharomyces cerevisiae S288C)
- (2r)-3-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl tetradecanoate (635 Da, Ligand)
- Mitochondrial import receptor subunit tom22 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Mitochondrial import receptor subunit tom6 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Mitochondrial import receptor subunit tom7 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Mitochondrial import receptor subunit tom5 (5 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM structure of the yeast TOM core complex (from TOM-TIM23 complex)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8w5j
Q-score: 0.281
Wang Q, Zhuang J, Huang R, Guan Z, Yan L, Hong S, Zhang L, Huang C, Liu Z, Yin P
Cell Discov (2024) 10 pp. 19-19 [ Pubmed: 38360717 DOI: doi:10.1038/s41421-023-00643-y ]
- Mitochondrial import receptor subunit tom40 (42 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- (2r)-3-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl tetradecanoate (635 Da, Ligand)
- Mitochondrial import receptor subunit tom22 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Mitochondrial import receptor subunit tom6 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Mitochondrial import receptor subunit tom7 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Tom-tim23 complex (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Mitochondrial import receptor subunit tom5 (5 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
structure of vp51 in white spot syndrome virus capsid
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 7xf2
Q-score: 0.325
To Be Published
- Capsid protein (51 kDa, Protein from White spot syndrome virus)
- White spot syndrome virus (Complex from White spot syndrome virus)
Cryo-EM structure of the human ABCB6 (coproporphyrin III-bound)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7dny
Q-score: 0.344
Kim S, Lee SS, Park JG, Kim JW, Ju S, Choi SH, Kim S, Kim NJ, Hong S, Kang JY, Jin MS
Mol Cells (2022) 45 pp. 575-587 [ DOI: doi:10.14348/molcells.2022.0040 Pubmed: 35950458 ]
- Cholesterol hemisuccinate (486 Da, Ligand)
- Coproporphyrin iii (654 Da, Ligand)
- Abcb6 (Complex from Homo sapiens)
- Atp-binding cassette sub-family b member 6, mitochondrial (93 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human ABCB6 (Hemin and GSH-bound)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7dnz
Q-score: 0.415
Kim S, Lee SS, Park JG, Kim JW, Ju S, Choi SH, Kim S, Kim NJ, Hong S, Kang JY, Jin MS
Mol Cells (2022) 45 pp. 575-587 [ DOI: doi:10.14348/molcells.2022.0040 Pubmed: 35950458 ]
- Cholesterol hemisuccinate (486 Da, Ligand)
- Abcb6 (Complex from Homo sapiens)
- Atp-binding cassette sub-family b member 6, mitochondrial (93 kDa, Protein from Homo sapiens)
- Glutathione (307 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
Li J, Han L, Vallese F, Ding Z, Choi SK, Hong S, Luo Y, Liu B, Chan CK, Tajkhorshid E, Zhu J, Clarke O, Zhang K, Gennis R
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2106750118 Pubmed: 34417297 ]
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase (140 kDa, Complex from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 2 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (Macromolecule from Escherichia coli 536)
Li J, Han L, Vallese F, Ding Z, Choi SK, Hong S, Luo Y, Liu B, Chan CK, Tajkhorshid E, Zhu J, Clarke O, Zhang K, Gennis R
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2106750118 Pubmed: 34417297 ]
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase (140 kDa, Complex from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 2 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (Macromolecule from Escherichia coli 536)
Li J, Han L, Vallese F, Ding Z, Choi SK, Hong S, Luo Y, Liu B, Chan CK, Tajkhorshid E, Zhu J, Clarke O, Zhang K, Gennis R
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2106750118 Pubmed: 34417297 ]
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase (140 kDa, Complex from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 2 (Macromolecule from Escherichia coli 536)
E. coli cytochrome bo3 in MSP nanodisc
Resolution: 2.19 Å
EM Method: Single-particle
Fitted PDBs: 7n9z
Q-score: 0.734
Li J, Han L, Vallese F, Ding Z, Choi SK, Hong S, Luo Y, Liu B, Chan CK, Tajkhorshid E, Zhu J, Clarke O, Zhang K, Gennis R
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2106750118 Pubmed: 34417297 ]
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Cytochrome o ubiquinol oxidase, subunit i (74 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- Cytochrome o ubiquinol oxidase (22 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Ubiquinone-8 (727 Da, Ligand)
- Ubiquinol oxidase subunit 2 (34 kDa, Protein from Escherichia coli)
- Cytochrome bo 3 ubiquinol oxidase (Complex from Escherichia coli)
- Cytochrome o ubiquinol oxidase, subunit iv (12 kDa, Protein from Escherichia coli)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Heme o (838 Da, Ligand)
Cryo-EM structure of the yeast mitochondrial SAM-Tom40 complex at 3.0 angstrom
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7e4h
Q-score: 0.445
Wang Q, Guan Z, Qi L, Zhuang J, Wang C, Hong S, Yan L, Wu Y, Cao X, Cao J, Yan J, Zou T, Liu Z, Zhang D, Yan C, Yin P
Science (2021) 373 pp. 1377-1381 [ DOI: doi:10.1126/science.abh0704 Pubmed: 34446444 ]
- Sorting assembly machinery 37 kda subunit (40 kDa, Protein from Saccharomyces cerevisiae S288c)
- Sorting assembly machinery 35 kda subunit (37 kDa, Protein from Saccharomyces cerevisiae S288c)
- Sorting assembly machinery subunits (Complex from Saccharomyces cerevisiae S288c)
- Sorting assembly machinery 50 kda subunit (54 kDa, Protein from Saccharomyces cerevisiae S288c)
- Mitochondrial import receptor subunit tom40 (46 kDa, Protein from Saccharomyces cerevisiae S288c)
- Sam-tom40 complex (Complex from Saccharomyces cerevisiae S288c)
- Mitochondrial import receptor subunit tom40 (Complex)