Cryo-EM structure of the human ABCB6 (coproporphyrin III-bound)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7dny
Q-score: 0.344
Kim S, Lee SS, Park JG, Kim JW, Ju S, Choi SH, Kim S, Kim NJ, Hong S, Kang JY, Jin MS
Mol Cells (2022) 45 pp. 575-587 [ DOI: doi:10.14348/molcells.2022.0040 Pubmed: 35950458 ]
- Abcb6 (Complex from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Atp-binding cassette sub-family b member 6, mitochondrial (93 kDa, Protein from Homo sapiens)
- Coproporphyrin iii (654 Da, Ligand)
Cryo-EM structure of the human ABCB6 (Hemin and GSH-bound)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7dnz
Q-score: 0.415
Kim S, Lee SS, Park JG, Kim JW, Ju S, Choi SH, Kim S, Kim NJ, Hong S, Kang JY, Jin MS
Mol Cells (2022) 45 pp. 575-587 [ DOI: doi:10.14348/molcells.2022.0040 Pubmed: 35950458 ]
- Atp-binding cassette sub-family b member 6, mitochondrial (93 kDa, Protein from Homo sapiens)
- Glutathione (307 Da, Ligand)
- Abcb6 (Complex from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
E. coli cytochrome bo3 in MSP nanodisc
Resolution: 2.19 Å
EM Method: Single-particle
Fitted PDBs: 7n9z
Q-score: 0.734
Li J, Han L, Vallese F, Ding Z, Choi SK, Hong S, Luo Y, Liu B, Chan CK, Tajkhorshid E, Zhu J, Clarke O, Zhang K, Gennis R
PNAS (2021) 118 [ Pubmed: 34417297 DOI: doi:10.1073/pnas.2106750118 ]
- Zinc ion (65 Da, Ligand)
- Cytochrome o ubiquinol oxidase (22 kDa, Protein from Escherichia coli)
- Ubiquinone-8 (727 Da, Ligand)
- Cytochrome o ubiquinol oxidase, subunit i (74 kDa, Protein from Escherichia coli)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Cytochrome o ubiquinol oxidase, subunit iv (12 kDa, Protein from Escherichia coli)
- Heme o (838 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome bo 3 ubiquinol oxidase (Complex from Escherichia coli)
- Ubiquinol oxidase subunit 2 (34 kDa, Protein from Escherichia coli)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Water (18 Da, Ligand)
2.55-Angstrom Cryo-EM structure of Cytochrome bo3 from Escherichia coli in Native Membrane
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 7cub
Q-score: 0.645
Li J, Han L, Vallese F, Ding Z, Choi SK, Hong S, Luo Y, Liu B, Chan CK, Tajkhorshid E, Zhu J, Clarke O, Zhang K, Gennis R
PNAS (2021) 118 [ Pubmed: 34417297 DOI: doi:10.1073/pnas.2106750118 ]
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase (140 kDa, Complex from Escherichia coli)
- Ubiquinone-8 (727 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (12 kDa, Protein from Escherichia coli)
- Heme o (838 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (74 kDa, Protein from Escherichia coli)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (22 kDa, Protein from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 2 (32 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
2.55-Angstrom Cryo-EM structure of Cytochrome bo3 from Escherichia coli in Native Membrane
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 7cuq
Q-score: 0.597
Li J, Han L, Vallese F, Ding Z, Choi SK, Hong S, Luo Y, Liu B, Chan CK, Tajkhorshid E, Zhu J, Clarke O, Zhang K, Gennis R
PNAS (2021) 118 [ Pubmed: 34417297 DOI: doi:10.1073/pnas.2106750118 ]
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase (140 kDa, Complex from Escherichia coli)
- Ubiquinone-8 (727 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (12 kDa, Protein from Escherichia coli)
- Heme o (838 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (74 kDa, Protein from Escherichia coli)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (22 kDa, Protein from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 2 (32 kDa, Protein from Escherichia coli)
Ubiquinol Binding Site of Cytochrome bo3 from Escherichia coli
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 7cuw
Q-score: 0.63
Li J, Han L, Vallese F, Ding Z, Choi SK, Hong S, Luo Y, Liu B, Chan CK, Tajkhorshid E, Zhu J, Clarke O, Zhang K, Gennis R
PNAS (2021) 118 [ Pubmed: 34417297 DOI: doi:10.1073/pnas.2106750118 ]
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase (140 kDa, Complex from Escherichia coli)
- Ubiquinone-8 (727 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (12 kDa, Protein from Escherichia coli)
- Heme o (838 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (74 kDa, Protein from Escherichia coli)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (22 kDa, Protein from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 2 (32 kDa, Protein from Escherichia coli)
Cryo-EM structure of human mitochondrial translocase TOM complex at 3.o angstrom.
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7cp9
Q-score: 0.449
Guan Z, Yan L, Wang Q, Qi L, Hong S, Gong Z, Yan C, Yin P
Cell Discov (2021) 7 pp. 22-22 [ DOI: doi:10.1038/s41421-021-00252-7 Pubmed: 33846286 ]
- Mitochondrial import receptor subunit tom5 homolog (6 kDa, Protein from Homo sapiens)
- Mitochondrial import receptor subunit tom22 homolog (15 kDa, Protein from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Tom translocase (440 MDa, Complex from Homo sapiens)
- Mitochondrial import receptor subunit tom40 homolog (37 kDa, Protein from Homo sapiens)
- Mitochondrial import receptor subunit tom7 homolog (6 kDa, Protein from Homo sapiens)
- Mitochondrial import receptor subunit tom6 homolog (8 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human mitochondrial translocase TIM22 complex at 3.7 angstrom.
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7cgp
Q-score: 0.394
Qi L, Wang Q, Guan Z, Wu Y, Shen C, Hong S, Cao J, Zhang X, Yan C, Yin P
Cell Res (2020) [ Pubmed: 32901109 DOI: doi:10.1038/s41422-020-00400-w ]
- Mitochondrial import inner membrane translocase subunit tim22 (20 kDa, Protein from Homo sapiens)
- Mitochondrial import inner membrane translocase subunit tim9 (10 kDa, Protein from Homo sapiens)
- Mitochondrial import inner membrane translocase subunit tim10 (10 kDa, Protein from Homo sapiens)
- Acylglycerol kinase, mitochondrial (47 kDa, Protein from Homo sapiens)
- Mitochondrial import inner membrane translocase subunit tim29 (29 kDa, Protein from Homo sapiens)
- Tim22 translocase (220 MDa, Complex from Homo sapiens)
- Mitochondrial import inner membrane translocase subunit tim10 b (11 kDa, Protein from Homo sapiens)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (749 Da, Ligand)
Cryo-EM structure of IRP2-FBXL5-SKP1 complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6vcd
Q-score: 0.549
Wang H, Shi H, Rajan M, Canarie ER, Hong S, Simoneschi D, Pagano M, Bush MF, Stoll S, Leibold EA, Zheng N
Mol Cell (2020) 78 pp. 31-41.e5 [ Pubmed: 32126207 DOI: doi:10.1016/j.molcel.2020.02.011 ]
- S-phase kinase-associated protein 1 (18 kDa, Protein from Homo sapiens)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- F-box/lrr-repeat protein 5 (54 kDa, Protein from Homo sapiens)
- Irp2-fblx5-skp1 complex (Complex from Homo sapiens)
- Iron-responsive element binding protein 2, isoform cra_a (105 kDa, Protein from Homo sapiens)
Cryo-EM density map of Alternative Complex III from Flavobacterium johnsoniae (Wild Type)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6btm
Q-score: 0.482
Sun C, Benlekbir S, Venkatakrishnan P, Wang Y, Hong S, Hosler J, Tajkhorshid E, Rubinstein JL, Gennis RB
Nature (2018) 557 pp. 123-126 [ DOI: doi:10.1038/s41586-018-0061-y Pubmed: 29695868 ]
- Fe3-s4 cluster (295 Da, Ligand)
- Alternative complex iii subunit f (52 kDa, Protein from Flavobacterium johnsoniae UW101)
- Decanoic acid (172 Da, Ligand)
- Alternative complex iii subunit e (18 kDa, Protein from Flavobacterium johnsoniae UW101)
- (2s)-3-hydroxypropane-1,2-diyl ditetradecanoate (512 Da, Ligand)
- Alternative complex iii subunit d (19 kDa, Protein from Flavobacterium johnsoniae UW101)
- Alternative complex iii subunit a (48 kDa, Protein from Flavobacterium johnsoniae UW101)
- Iron/sulfur cluster (351 Da, Ligand)
- Aciii-cyt aa3 supercomplex (Complex from Flavobacterium johnsoniae UW101)
- Heme c (618 Da, Ligand)
- Alternative complex iii subunit c (53 kDa, Protein from Flavobacterium johnsoniae UW101)
- Alternative complex iii subunit b (102 kDa, Protein from Flavobacterium johnsoniae UW101)