Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, dimer form
Ito F, Li Z, Minakhin L, Chandramouly G, Tyagi M, Betsch R, Krais JJ, Taberi B, Vekariya U, Calbert M, Skorski T, Johnson N, Chen XS, Pomerantz RT
Nat Commun (2024) 15 pp. 7003-7003 [ DOI: doi:10.1038/s41467-024-51351-4 Pubmed: 39143110 ]
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, tetramer form
Ito F, Li Z, Minakhin L, Chandramouly G, Tyagi M, Betsch R, Krais JJ, Taberi B, Vekariya U, Calbert M, Skorski T, Johnson N, Chen XS, Pomerantz RT
Nat Commun (2024) 15 pp. 7003-7003 [ DOI: doi:10.1038/s41467-024-51351-4 Pubmed: 39143110 ]
Human DNA polymerase theta helicase domain in complex with ssDNA, dimer form
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8w0a
Q-score: 0.435
Ito F, Li Z, Minakhin L, Khant HA, Pomerantz RT, Chen XS
bioRxiv (2024) [ DOI: doi:10.1101/2024.06.07.597860 Pubmed: 38895274 ]
- Human dna polymerase theta helicase domain in complex with ssdna (253 kDa, Complex from Homo sapiens)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*t)-3') (13 kDa, DNA from Homo sapiens)
- Dna polymerase theta (99 kDa, Protein from Homo sapiens)
Human DNA polymerase theta helicase domain in complex with AMP-PNP, dimer form
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9asj
Q-score: 0.411
Ito F, Li Z, Minakhin L, Khant HA, Pomerantz RT, Chen XS
bioRxiv (2024) [ DOI: doi:10.1101/2024.06.07.597860 Pubmed: 38895274 ]
- Human dna polymerase theta helicase domain in complex with inhibitor amp-pnp (199 kDa, Complex from Homo sapiens)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna polymerase theta (99 kDa, Protein from Homo sapiens)
Human DNA polymerase theta helicase domain dimer, apo-form
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9ask
Q-score: 0.389
Ito F, Li Z, Minakhin L, Khant HA, Pomerantz RT, Chen XS
bioRxiv (2024) [ DOI: doi:10.1101/2024.06.07.597860 Pubmed: 38895274 ]
- Human dna polymerase theta helicase domain dimer, apo-form (199 kDa, Complex from Homo sapiens)
- Dna polymerase theta (99 kDa, Protein from Homo sapiens)
Human DNA polymerase theta helicase domain tetramer, apo-form
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9asl
Q-score: 0.392
Ito F, Li Z, Minakhin L, Khant HA, Pomerantz RT, Chen XS
bioRxiv (2024) [ DOI: doi:10.1101/2024.06.07.597860 Pubmed: 38895274 ]
- Human dna polymerase theta helicase domain tetramer, apo-form (398 kDa, Complex from Homo sapiens)
- Dna polymerase theta (99 kDa, Protein from Homo sapiens)
Human DNA polymerase theta helicase domain in microhomology annealed state 1, dimer form
Ito F, Li Z, Minakhin L, Khant HA, Pomerantz RT, Chen XS
bioRxiv (2024) [ DOI: doi:10.1101/2024.06.07.597860 Pubmed: 38895274 ]
Human DNA polymerase theta helicase domain in microhomology annealed state 2, dimer form
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9c5q
Q-score: 0.479
Ito F, Li Z, Minakhin L, Khant HA, Pomerantz RT, Chen XS
bioRxiv (2024) [ DOI: doi:10.1101/2024.06.07.597860 Pubmed: 38895274 ]
Human APOBEC3H bound to HIV-1 Vif in complex with CBF-beta, ELOB, ELOC, and CUL5
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 8fvi
Q-score: 0.431
Ito F, Alvarez-Cabrera AL, Kim K, Zhou ZH, Chen XS
Nat Commun (2023) 14 pp. 5241-5241 [ DOI: doi:10.1038/s41467-023-40955-x Pubmed: 37640699 ]
- Dna dc->du-editing enzyme apobec-3h (22 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Virion infectivity factor (21 kDa, Protein from Human immunodeficiency virus 1)
- Elongin-b (11 kDa, Protein from Homo sapiens)
- Hetero-hexameric complex of hiv-1 vif and human apobec3h, cbf-beta, elob, eloc, and cul5 (120 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Elongin-c (10 kDa, Protein from Homo sapiens)
- Rna(5'-r(ap*up*up*up*up*up*up*up*up*u)-3') (3 kDa, RNA from Escherichia coli)
- Rna(5'-r(*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (2 kDa, RNA from Escherichia coli)
- Core-binding factor subunit beta (18 kDa, Protein from Homo sapiens)
- Cullin 5 (36 kDa, Protein from Homo sapiens)
Dimeric form of HIV-1 Vif in complex with human CBF-beta, ELOB, ELOC, and CUL5
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 8fvj
Q-score: 0.374
Ito F, Alvarez-Cabrera AL, Kim K, Zhou ZH, Chen XS
Nat Commun (2023) 14 pp. 5241-5241 [ DOI: doi:10.1038/s41467-023-40955-x Pubmed: 37640699 ]
- Dimeric form of hiv-1 vif in complex with human cbf-beta, elob, eloc, and cul5 (198 kDa, Complex from Homo sapiens)
- Virion infectivity factor (21 kDa, Protein from Human immunodeficiency virus 1)
- Elongin-b (11 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Elongin-c (10 kDa, Protein from Homo sapiens)
- Cullin-5 (36 kDa, Protein from Homo sapiens)
- Core-binding factor subunit beta (18 kDa, Protein from Homo sapiens)