Pintscher S, Pietras R, Mielecki B, Szwalec M, Wójcik-Augustyn A, Indyka P, Rawski M, Koziej Ł, Jaciuk M, Ważny G, Glatt S, Osyczka A
Nat Plants (2024) 10 pp. 1814-1825 [ DOI: 10.1038/s41477-024-01804-x Pubmed: 39362993 ]
Image sets:
Single particle cryoEM data of spinach cytochrome b6f incubated with decylplastoquinone
Pintscher S, Pietras R, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A
Nat. Plants. (2024) 10 pp. 1814-1825 [ DOI: 10.1038/s41477-024-01804-x ]
Image sets:
Resolution: 1.94 Å
EM Method: Single-particle
Fitted PDBs: 9es7
Q-score: 0.682
Pintscher S, Pietras R, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A
Nat Plants (2024) 10 pp. 1814-1825 [ DOI: doi:10.1038/s41477-024-01804-x Pubmed: 39362993 ]
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Cytochrome b6-f complex subunit 8 (3 kDa, Protein from Spinacia oleracea)
- Heme c (618 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Undecyl-maltoside (496 Da, Ligand)
- Cytochrome f (35 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 4 (17 kDa, Protein from Spinacia oleracea)
- Cytochrome b6f complex incubated with decylplastoquinone (220 kDa, Complex from Spinacia oleracea)
- Water (18 Da, Ligand)
- Thylakoid soluble phosphoprotein (10 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 6 (3 kDa, Protein from Spinacia oleracea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Cytochrome b6-f complex subunit 7 (12 kDa, Protein from Spinacia oleracea)
- Cytochrome b6 (24 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 5 (4 kDa, Protein from Spinacia oleracea)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
Resolution: 2.24 Å
EM Method: Single-particle
Fitted PDBs: 9es8
Q-score: 0.626
Pintscher S, Pietras R, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A
Nat Plants (2024) 10 pp. 1814-1825 [ DOI: doi:10.1038/s41477-024-01804-x Pubmed: 39362993 ]
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Cytochrome b6-f complex subunit 8 (3 kDa, Protein from Spinacia oleracea)
- Heme c (618 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Undecyl-maltoside (496 Da, Ligand)
- Cytochrome f (35 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 4 (17 kDa, Protein from Spinacia oleracea)
- Water (18 Da, Ligand)
- Thylakoid soluble phosphoprotein (10 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 6 (3 kDa, Protein from Spinacia oleracea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Cytochrome b6-f complex subunit 7 (12 kDa, Protein from Spinacia oleracea)
- Cytochrome b6f complex with decylplastoquinol bound at quinone reduction site (220 kDa, Complex from Spinacia oleracea)
- Cytochrome b6 (24 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 5 (4 kDa, Protein from Spinacia oleracea)
- Decylplastoquinone (276 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
Resolution: 2.33 Å
EM Method: Single-particle
Fitted PDBs: 9es9
Q-score: 0.618
Pintscher S, Pietras R, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A
Nat Plants (2024) 10 pp. 1814-1825 [ DOI: doi:10.1038/s41477-024-01804-x Pubmed: 39362993 ]
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Cytochrome b6-f complex subunit 8 (3 kDa, Protein from Spinacia oleracea)
- Heme c (618 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Cytochrome b6f complex inhibited with dbmib (2,5-dibromo-3-isopropyl-6-methylbenzo-1,4-quinone) (220 kDa, Complex from Spinacia oleracea)
- Undecyl-maltoside (496 Da, Ligand)
- Cytochrome f (35 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 4 (17 kDa, Protein from Spinacia oleracea)
- Water (18 Da, Ligand)
- Thylakoid soluble phosphoprotein (10 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 6 (3 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 7 (12 kDa, Protein from Spinacia oleracea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- 2,5-dibromo-3-isopropyl-6-methylbenzo-1,4-quinone (321 Da, Ligand)
- Cytochrome b6 (24 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 5 (4 kDa, Protein from Spinacia oleracea)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
Cryo-EM structure of human Elp123 in complex with tRNA, acetyl-CoA, 5'-deoxyadenosine and methionine
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8ptx
Q-score: 0.441
Abbassi NE, Jaciuk M, Scherf D, Bohnert P, Rau A, Hammermeister A, Rawski M, Indyka P, Wazny G, Chramiec-Glabik A, Dobosz D, Skupien-Rabian B, Jankowska U, Rappsilber J, Schaffrath R, Lin TY, Glatt S
Nat Commun (2024) 15 pp. 4094-4094 [ Pubmed: 38750017 DOI: doi:10.1038/s41467-024-48251-y ]
- Elongator complex protein 2 (92 kDa, Protein from Homo sapiens)
- 5'-deoxyadenosine (251 Da, Ligand)
- Acetyl coenzyme *a (809 Da, Ligand)
- Elongator complex protein 1 (150 kDa, Protein from Homo sapiens)
- Methionine (149 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Elongator complex protein 3 (65 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Trna gln (24 kDa, RNA from Homo sapiens)
- Human elp123 in complex with glutamine trna, acetyl-coa, 5'-deoxyadenosine and methionine (635 kDa, Complex from Homo sapiens)
Cryo-EM structure of human Elp123 in complex with 5'-deoxyadenosine and methionine
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 8pty
Q-score: 0.487
Abbassi NE, Jaciuk M, Scherf D, Bohnert P, Rau A, Hammermeister A, Rawski M, Indyka P, Wazny G, Chramiec-Glabik A, Dobosz D, Skupien-Rabian B, Jankowska U, Rappsilber J, Schaffrath R, Lin TY, Glatt S
Nat Commun (2024) 15 pp. 4094-4094 [ Pubmed: 38750017 DOI: doi:10.1038/s41467-024-48251-y ]
- Elongator complex protein 2 (92 kDa, Protein from Homo sapiens)
- 5'-deoxyadenosine (251 Da, Ligand)
- Elongator complex protein 1 (150 kDa, Protein from Homo sapiens)
- Methionine (149 Da, Ligand)
- Human elp123 in complex with 5'-deoxyadenosine and methionine (610 kDa, Complex from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Elongator complex protein 3 (65 kDa, Protein from Homo sapiens)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8ptz
Q-score: 0.386
Abbassi NE, Jaciuk M, Scherf D, Bohnert P, Rau A, Hammermeister A, Rawski M, Indyka P, Wazny G, Chramiec-Glabik A, Dobosz D, Skupien-Rabian B, Jankowska U, Rappsilber J, Schaffrath R, Lin TY, Glatt S
Nat Commun (2024) 15 pp. 4094-4094 [ Pubmed: 38750017 DOI: doi:10.1038/s41467-024-48251-y ]
- Elongator complex protein 2 (92 kDa, Protein from Homo sapiens)
- S-ethyl-coa (795 Da, Ligand)
- 5'-deoxyadenosine (251 Da, Ligand)
- Elongator complex protein 1 (150 kDa, Protein from Homo sapiens)
- Methionine (149 Da, Ligand)
- Human elp123 in complex with glutamine trna, s-ethyl-coa, 5'-deoxyadenosine and methionine (635 kDa, Complex from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Elongator complex protein 3 (65 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Trna gln (24 kDa, RNA from Homo sapiens)
Resolution: 4.25 Å
EM Method: Single-particle
Fitted PDBs: 8pu0
Q-score: 0.277
Abbassi NE, Jaciuk M, Scherf D, Bohnert P, Rau A, Hammermeister A, Rawski M, Indyka P, Wazny G, Chramiec-Glabik A, Dobosz D, Skupien-Rabian B, Jankowska U, Rappsilber J, Schaffrath R, Lin TY, Glatt S
Nat Commun (2024) 15 pp. 4094-4094 [ Pubmed: 38750017 DOI: doi:10.1038/s41467-024-48251-y ]
- Elongator complex protein 2 (92 kDa, Protein from Homo sapiens)
- Human elp123 in complex with glutamine trna, desulpho-coa, 5'-deoxyadenosine and methionine (635 kDa, Complex from Homo sapiens)
- 5'-deoxyadenosine (251 Da, Ligand)
- Elongator complex protein 1 (150 kDa, Protein from Homo sapiens)
- Methionine (149 Da, Ligand)
- Desulfo-coenzyme a (735 Da, Ligand)
- Elongator complex protein 3 (65 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Trna gln (24 kDa, RNA from Homo sapiens)
Spinacia oleracea endogenous cytochrome b6f complex
Sarewicz M, Szwalec M, Pintscher S, Indyka P, Rawski M, Pietras R, Mielecki B, Koziej Ł, Jaciuk M, Glatt S, Osyczka A
Sci Adv (2023) 9 [ DOI: 10.1126/sciadv.add9688 Pubmed: 36638176 ]
Image sets: