A cryo-EM structure of B. oleracea RNA polymerase V at 3.57 Angstrom
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 8hil
Q-score: 0.461
Xie G, Du X, Hu H, Li S, Cao X, Jacobsen SE, Du J
Science (2023) 379 pp. 1209-1213 [ DOI: doi:10.1126/science.adf8231 Pubmed: 36893216 ]
- Dna-directed rna polymerase v largest subunit (222 kDa, Protein from Brassica oleracea)
- Rna_pol_l_2 domain-containing protein (13 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerases ii, iv and v subunit 12 (5 kDa, Protein from Brassica oleracea)
- Zinc ion (65 Da, Ligand)
- Rpold domain-containing protein (35 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (16 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerase v (Complex from Brassica oleracea)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerase subunit (13 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Brassica oleracea)
- Dna-dependent rna polymerase iv and v subunit 2 (132 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (26 kDa, Protein from Brassica oleracea)
- Magnesium ion (24 Da, Ligand)
A cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 Angstrom
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8him
Q-score: 0.543
Xie G, Du X, Hu H, Li S, Cao X, Jacobsen SE, Du J
Science (2023) 379 pp. 1209-1213 [ DOI: doi:10.1126/science.adf8231 Pubmed: 36893216 ]
- Dna (34-mer) (10 kDa, DNA from Brassica oleracea)
- Rna_pol_l_2 domain-containing protein (13 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerases ii, iv and v subunit 12 (5 kDa, Protein from Brassica oleracea)
- Zinc ion (65 Da, Ligand)
- Dna (34-mer) (10 kDa, DNA from Brassica oleracea)
- Dna-directed rna polymerase (Complex)
- Rna (5'-r(*up*ap*up*ap*up*gp*cp*ap*up*ap*ap*ap*gp*ap*cp*cp*ap*gp*gp*c)-3') (6 kDa, RNA from Brassica oleracea)
- Rpold domain-containing protein (35 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (16 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerase v largest subunit (222 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerase subunit (13 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerase iv and v subunit 2 (132 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Brassica oleracea)
- Dna-rna (Complex)
- Dna-directed rna polymerase v elongation complex (Complex from Brassica oleracea)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (26 kDa, Protein from Brassica oleracea)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of Arabidopsis DCL3 in complex with a 40-bp RNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7vg2
Q-score: 0.545
Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris CJ, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J
Science (2021) 374 pp. 1152-1157 [ DOI: doi:10.1126/science.abl4546 Pubmed: 34648373 ]
- Rna (Complex)
- Tas1a reverse strand (13 kDa, RNA from Arabidopsis thaliana)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Tas1a forward strand (5'-phosphorylation) (12 kDa, RNA from Arabidopsis thaliana)
- Dcl3 (Complex from Arabidopsis thaliana)
- Dcl3 in complex with a 40-bp rna (210 kDa, Complex)
- Dicer-like 3 (182 kDa, Protein from Arabidopsis thaliana)
Cryo-EM structure of Arabidopsis DCL3 in complex with a 30-bp RNA
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 7vg3
Q-score: 0.462
Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris CJ, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J
Science (2021) 374 pp. 1152-1157 [ DOI: doi:10.1126/science.abl4546 Pubmed: 34648373 ]
- Rna (Complex)
- Tas1a rna reverse strand (10 kDa, RNA from Arabidopsis thaliana)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Dcl3 (Complex from Arabidopsis thaliana)
- Dcl3 in complex with a 30-bp rna (200 kDa, Complex)
- Dicer-like 3 (182 kDa, Protein from Arabidopsis thaliana)
- Tas1a rna forward strand (5'-phosphorylated) (9 kDa, RNA from Arabidopsis thaliana)