Cryo-EM structure of BG505 SOSIP trimer purified via Galanthus nivalis lectin chromatography
Parthasarathy D, Pothula KR, Ratnapriya S, Cervera Benet H, Parsons R, Huang X, Sammour S, Janowska K, Harris M, Sodroski J, Acharya P, Herschhorn A
Nat Commun (2024) 15 pp. 7334-7334 [ Pubmed: 39187497 DOI: doi:10.1038/s41467-024-51656-4 ]
Cryo-EM structure of 1059 SOSIP trimer purified via Galanthus nivalis lectin chromatography
Parthasarathy D, Pothula KR, Ratnapriya S, Cervera Benet H, Parsons R, Huang X, Sammour S, Janowska K, Harris M, Sodroski J, Acharya P, Herschhorn A
Nat Commun (2024) 15 pp. 7334-7334 [ Pubmed: 39187497 DOI: doi:10.1038/s41467-024-51656-4 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 1059 sosip surface protein gp120 (55 kDa, Protein from Human immunodeficiency virus 1)
- Cryo-em structure of 1059 sosip trimer purified via galanthus nivalis lectin chromatography (217 kDa, Complex from Human immunodeficiency virus 1)
- 1059 sosip transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
Williams WB, Alam SM, Ofek G, Erdmann N, Montefiori DC, Seaman MS, Wagh K, Korber B, Edwards RJ, Mansouri K, Eaton A, Cain DW, Martin M, Hwang J, Arus-Altuz A, Lu X, Cai F, Jamieson N, Parks R, Barr M, Foulger A, Anasti K, Patel P, Sammour S, Parsons RJ, Huang X, Lindenberger J, Fetics S, Janowska K, Niyongabo A, Janus BM, Astavans A, Fox CB, Mohanty I, Evangelous T, Chen Y, Berry M, Kirshner H, Van Itallie E, Saunders KO, Wiehe K, Cohen KW, McElrath MJ, Corey L, Acharya P, Walsh SR, Baden LR, Haynes BF
Cell (2024) 187 pp. 2919-2934.e20 [ DOI: doi:10.1016/j.cell.2024.04.033 Pubmed: 38761800 ]
- Dh1317.4 heavy chain (Protein from Homo sapiens)
- Complex of jrfl.sosip.v6 with dh1317.4, vrc01 and pgt145 (450 MDa, Complex from Homo sapiens)
- Dh1317.4 light chain (Protein from Homo sapiens)
- Jrfl.sosip.v6 (Protein from Homo sapiens)
SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.5)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ukd
Q-score: 0.534
Zhang QE, Lindenberger J, Parsons RJ, Thakur B, Parks R, Park CS, Huang X, Sammour S, Janowska K, Spence TN, Edwards RJ, Martin M, Williams WB, Gobeil S, Montefiori DC, Korber B, Saunders KO, Haynes BF, Henderson R, Acharya P
Mol Cell (2024) 84 pp. 2747- [ Pubmed: 39059371 DOI: doi:10.1016/j.molcel.2024.06.028 ]
SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-EG.5)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8ukf
Q-score: 0.528
Zhang QE, Lindenberger J, Parsons RJ, Thakur B, Parks R, Park CS, Huang X, Sammour S, Janowska K, Spence TN, Edwards RJ, Martin M, Williams WB, Gobeil S, Montefiori DC, Korber B, Saunders KO, Haynes BF, Henderson R, Acharya P
Mol Cell (2024) 84 pp. 2747- [ Pubmed: 39059371 DOI: doi:10.1016/j.molcel.2024.06.028 ]
SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.16)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8uir
Q-score: 0.507
Zhang QE, Lindenberger J, Parsons RJ, Thakur B, Parks R, Park CS, Huang X, Sammour S, Janowska K, Spence TN, Edwards RJ, Martin M, Williams WB, Gobeil S, Montefiori DC, Korber B, Saunders KO, Haynes BF, Henderson R, Acharya P
Mol Cell (2024) 84 pp. 2747-2764.e7 [ Pubmed: 39059371 DOI: doi:10.1016/j.molcel.2024.06.028 ]
SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer consensus (S-RRAR-Omicron-XBB.1.16)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8uk1
Q-score: 0.53
Zhang QE, Lindenberger J, Parsons RJ, Thakur B, Parks R, Park CS, Huang X, Sammour S, Janowska K, Spence TN, Edwards RJ, Martin M, Williams WB, Gobeil S, Montefiori DC, Korber B, Saunders KO, Haynes BF, Henderson R, Acharya P
Mol Cell (2024) 84 pp. 2747-2764.e7 [ Pubmed: 39059371 DOI: doi:10.1016/j.molcel.2024.06.028 ]
SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 1 (S-RRAR-Omicron-XBB.1.16)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8v0l
Q-score: 0.538
Zhang QE, Lindenberger J, Parsons RJ, Thakur B, Parks R, Park CS, Huang X, Sammour S, Janowska K, Spence TN, Edwards RJ, Martin M, Williams WB, Gobeil S, Montefiori DC, Korber B, Saunders KO, Haynes BF, Henderson R, Acharya P
Mol Cell (2024) 84 pp. 2747-2764.e7 [ Pubmed: 39059371 DOI: doi:10.1016/j.molcel.2024.06.028 ]
SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 2 (S-RRAR-Omicron-XBB.1.16)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8v0m
Q-score: 0.442
Zhang QE, Lindenberger J, Parsons RJ, Thakur B, Parks R, Park CS, Huang X, Sammour S, Janowska K, Spence TN, Edwards RJ, Martin M, Williams WB, Gobeil S, Montefiori DC, Korber B, Saunders KO, Haynes BF, Henderson R, Acharya P
Mol Cell (2024) 84 pp. 2747-2764.e7 [ Pubmed: 39059371 DOI: doi:10.1016/j.molcel.2024.06.028 ]
SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 3 (S-RRAR-Omicron-XBB.1.16)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8v0n
Q-score: 0.48
Zhang QE, Lindenberger J, Parsons RJ, Thakur B, Parks R, Park CS, Huang X, Sammour S, Janowska K, Spence TN, Edwards RJ, Martin M, Williams WB, Gobeil S, Montefiori DC, Korber B, Saunders KO, Haynes BF, Henderson R, Acharya P
Mol Cell (2024) 84 pp. 2747-2764.e7 [ Pubmed: 39059371 DOI: doi:10.1016/j.molcel.2024.06.028 ]