Cryo-EM structure of human CD5L bound to IgM-Fc/J
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 8wyr
Q-score: 0.4
Nat Commun (2024) 15 pp. 8397-8397 [ Pubmed: 39333069 DOI: doi:10.1038/s41467-024-52175-y ]
- Calcium ion (40 Da, Ligand)
- Interleukin-2,cd5 antigen-like (39 kDa, Protein from Homo sapiens)
- Interleukin-2,isoform 1 of immunoglobulin heavy constant mu (44 kDa, Protein from Homo sapiens)
- Ternary complex of igm-fc with the j chain and cd5l (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin j chain (19 kDa, Protein from Homo sapiens)
Local map of human CD5L bound to IgM-Fc/J
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8wys
Q-score: 0.422
Nat Commun (2024) 15 pp. 8397-8397 [ Pubmed: 39333069 DOI: doi:10.1038/s41467-024-52175-y ]
- Calcium ion (40 Da, Ligand)
- Interleukin-2,cd5 antigen-like (39 kDa, Protein from Homo sapiens)
- Interleukin-2,isoform 1 of immunoglobulin heavy constant mu (44 kDa, Protein from Homo sapiens)
- Ternary complex of igm-fc with the j chain and cd5l (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin j chain (19 kDa, Protein from Homo sapiens)
Cryo-EM structure of human IgM-Fc in complex with the J chain and the P. falciparum VAR2CSA FCR3
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 7y0h
Q-score: 0.38
Ji C, Shen H, Su C, Li Y, Chen S, Sharp TH, Xiao J
Nat Commun (2023) 14 pp. 2650-2650 [ DOI: doi:10.1038/s41467-023-38320-z Pubmed: 37156765 ]
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- Human igm-fc (Complex)
- P. falciparum var2csa fcr3 (Complex from Homo sapiens)
- Ternary complex of human igm-fc in complex with the j chain and the p. falciparum var2csa fcr3 (Complex from Plasmodium falciparum)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Erythrocyte membrane protein 1 (306 kDa, Protein from Plasmodium falciparum)
- Immunoglobulin heavy constant mu (41 kDa, Protein from Homo sapiens)
Cryo-EM structure of human IgM-Fc in complex with the J chain and the P. falciparum TM284VAR1
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 7y0j
Q-score: 0.373
Ji C, Shen H, Su C, Li Y, Chen S, Sharp TH, Xiao J
Nat Commun (2023) 14 pp. 2650-2650 [ DOI: doi:10.1038/s41467-023-38320-z Pubmed: 37156765 ]
- Tm284var1 (Complex from Homo sapiens)
- Erythrocyte membrane protein 2 variant tm284var1 (277 kDa, Protein from Plasmodium falciparum)
- Ternary complex of human igm-fc in complex with the j chain and the p. falciparum tm284var1 (Complex from Plasmodium falciparum)
- Immunoglobulin heavy constant mu (41 kDa, Protein from Homo sapiens)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin heavy constant mu (Complex from Homo sapiens)
- Immunoglobulin j chain (Complex)
Cryo-EM structure of human IgM-Fc in complex with the J chain and the DBL domain of DBLMSP
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7y09
Q-score: 0.35
Ji C, Shen H, Su C, Li Y, Chen S, Sharp TH, Xiao J
Nat Commun (2023) 14 pp. 2650-2650 [ DOI: doi:10.1038/s41467-023-38320-z Pubmed: 37156765 ]
- Ternary complex of human igm-fc with the j chain and the dbl domain of dblmsp (Complex from Plasmodium falciparum)
- Putative erythrocyte membrane protein (Complex from Homo sapiens)
- Immunoglobulin heavy constant mu (41 kDa, Protein from Homo sapiens)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- Putative erythrocyte membrane protein (75 kDa, Protein from Plasmodium falciparum)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin heavy constant mu (Complex from Homo sapiens)
- Immunoglobulin j chain (Complex)
Cryo-EM structure of human IgM-Fc in complex with the J chain and the DBL domain of DBLMSP2
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 7yg2
Q-score: 0.338
Ji C, Shen H, Su C, Li Y, Chen S, Sharp TH, Xiao J
Nat Commun (2023) 14 pp. 2650-2650 [ DOI: doi:10.1038/s41467-023-38320-z Pubmed: 37156765 ]
- Putative erythrocyte membrane protein (Complex from Homo sapiens)
- Dblmsp2 (36 kDa, Protein from Plasmodium falciparum)
- Immunoglobulin heavy constant mu (41 kDa, Protein from Homo sapiens)
- Ternary complex of human igm-fc with the j chain and the dbl domain of dblmsp2 (Complex from Plasmodium falciparum)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin heavy constant mu (Complex from Homo sapiens)
- Immunoglobulin j chain (Complex)