Electron Microscopy Data Bank

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Release date: Feb. 12, 2025
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 8xsd
Q-score: -0.008

Chen Z, Feng L, Wang L, Zhang L, Zheng B, Fu H, Li F, Liu L, Lv Q, Deng R, Xu Y, Hu Y, Zheng J, Qin C, Bao L, Wang X, Jin Q

Signal Transduct Target Ther (2025) 10 pp. 14-14 [ DOI: doi:10.1038/s41392-024-02114-6 Pubmed: 39800731 ]

Sample:

Ba.5 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cr9 heavy chain (12 kDa, Protein from Homo sapiens)
Cr9 light chain (11 kDa, Protein from Homo sapiens)
Human ace2 (Complex from Homo sapiens)
Rbd in complex with ace2 (Complex)

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EMD-39839

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BA.5 RBD in complex with CR9

Release date: Feb. 12, 2025
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 8z86
Q-score: 0.452

Chen Z, Feng L, Wang L, Zhang L, Zheng B, Fu H, Li F, Liu L, Lv Q, Deng R, Xu Y, Hu Y, Zheng J, Qin C, Bao L, Wang X, Jin Q

Signal Transduct Target Ther (2025) 10 pp. 14-14 [ DOI: doi:10.1038/s41392-024-02114-6 Pubmed: 39800731 ]

Sample:

Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cr9 heavy chain (12 kDa, Protein from Homo sapiens)
Ba.5 rbd in complex with cr9 (Complex from Homo sapiens)
Cr9 light chain (11 kDa, Protein from Homo sapiens)

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EMD-31450

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Structure of RPAP2-bound RNA polymerase II

Release date: July 7, 2021
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 7f4g
Q-score: 0.53

Wang X, Qi Y, Wang Z, Wang L, Song A, Tao B, Li J, Zhao D, Zhang H, Jin Q, Jiang YZ, Chen FX, Xu Y, Chen X

Cell Rep (2022) 39 pp. 110732-110732 [ DOI: doi:10.1016/j.celrep.2022.110732 Pubmed: 35476980 ]

Sample:

Zinc ion (65 Da, Ligand)
Dna-directed rna polymerase ii subunit f (14 kDa, Protein from Sus scrofa)
Structure of rpap2-bound rna polymerase ii (Complex from Homo sapiens)
Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa)
Rpb10 (7 kDa, Protein from Sus scrofa)
Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa)
Dna-directed rna polymerase subunit beta (134 kDa, Protein from Sus scrofa)
Rpb1 (217 kDa, Protein from Sus scrofa)
Rna_pol_l_2 domain-containing protein (13 kDa, Protein from Sus scrofa)
Rpap2 (69 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase ii subunit rpb4 (16 kDa, Protein from Sus scrofa)
Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa)
Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
Rpb12 (7 kDa, Protein from Sus scrofa)

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EMD-31451

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Structure of RPAP2-bound RNA Polymerase II

Release date: July 7, 2021
Resolution: 3.5 Å
EM Method: Single-particle

Wang X, Qi Y, Wang Z, Wang L, Song A, Tao B, Li J, Zhao D, Zhang H, Jin Q, Jiang YZ, Chen FX, Xu Y, Chen X

Cell Rep (2022) 39 pp. 110732-110732 [ DOI: doi:10.1016/j.celrep.2022.110732 Pubmed: 35476980 ]

Sample:

Structure of rpap2-bound rna polymerase ii (Complex from Homo sapiens)

EMD-31354

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PVC-Pnf baseplate

Release date: June 30, 2021
Resolution: 3.7 Å
EM Method: Single-particle

Wang X, Cheng J, Shen J, Liu L, Li N, Gao N, Jiang F, Jin Q

Sci China Life Sci (2022) 65 pp. 618-630 [ DOI: doi:10.1007/s11427-021-1955-4 Pubmed: 34185241 ]

Sample:

Pvc with effectors pnf and pdp1 (Complex from Photorhabdus asymbiotica)

EMD-31355

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PVC-Pnf trunk

Release date: June 30, 2021
Resolution: 3.6 Å
EM Method: Single-particle

Wang X, Cheng J, Shen J, Liu L, Li N, Gao N, Jiang F, Jin Q

Sci China Life Sci (2022) 65 pp. 618-630 [ DOI: doi:10.1007/s11427-021-1955-4 Pubmed: 34185241 ]

Sample:

Pvc-pnf trunk (Complex from Photorhabdus asymbiotica)

EMD-31356

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PVC-Pdp1 baseplate

Release date: June 30, 2021
Resolution: 3.8 Å
EM Method: Single-particle

Wang X, Cheng J, Shen J, Liu L, Li N, Gao N, Jiang F, Jin Q

Sci China Life Sci (2022) 65 pp. 618-630 [ DOI: doi:10.1007/s11427-021-1955-4 Pubmed: 34185241 ]

Sample:

Pvc-pdp1 baseplate (Complex from Photorhabdus asymbiotica)

EMD-31357

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PVC-Pdp1 trunk

Release date: June 30, 2021
Resolution: 3.6 Å
EM Method: Single-particle

Wang X, Cheng J, Shen J, Liu L, Li N, Gao N, Jiang F, Jin Q

Sci China Life Sci (2022) 65 pp. 618-630 [ DOI: doi:10.1007/s11427-021-1955-4 Pubmed: 34185241 ]

Sample:

Pvc-pdp1 trunk (Complex from Photorhabdus asymbiotica)

EMD-31358

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PVC-Empty baseplate

Release date: June 30, 2021
Resolution: 3.9 Å
EM Method: Single-particle

Wang X, Cheng J, Shen J, Liu L, Li N, Gao N, Jiang F, Jin Q

Sci China Life Sci (2022) 65 pp. 618-630 [ DOI: doi:10.1007/s11427-021-1955-4 Pubmed: 34185241 ]

Sample:

Pvc-empty baseplate (Complex from Photorhabdus asymbiotica)

EMD-31359

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PVC-Empty trunk

Release date: June 30, 2021
Resolution: 3.8 Å
EM Method: Single-particle

Wang X, Cheng J, Shen J, Liu L, Li N, Gao N, Jiang F, Jin Q

Sci China Life Sci (2022) 65 pp. 618-630 [ DOI: doi:10.1007/s11427-021-1955-4 Pubmed: 34185241 ]

Sample:

Pvc-empty trunk (Complex from Photorhabdus asymbiotica)

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