Structure of CbCas9 bound to 20-nucleotide complementary DNA substrate
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8iyq
Q-score: 0.513
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ Pubmed: 38811729 DOI: doi:10.1038/s41586-024-07486-x ]
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
- Structure of cbcas9 bound to 20-nucleotide complementary dna substrate (228 kDa, Complex from Chryseobacterium)
- Ts (8 kDa, DNA from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
Structure of CbCas9 bound to 6-nucleotide complementary DNA substrate
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8wmh
Q-score: 0.279
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ Pubmed: 38811729 DOI: doi:10.1038/s41586-024-07486-x ]
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Ts (8 kDa, DNA from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
- Structure of cbcas9 bound to 6-nucleotide complementary dna substrate (228 kDa, Complex from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
Structure of CbCas9-PcrIIC1 complex bound to 28-bp DNA substrate (20-nt complementary)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8wmm
Q-score: 0.342
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ Pubmed: 38811729 DOI: doi:10.1038/s41586-024-07486-x ]
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
- Ts (8 kDa, DNA from Chryseobacterium)
- Magnesium ion (24 Da, Ligand)
- Pcriic1 (15 kDa, Protein from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
- Structure of cbcas9-pcriic1 complex bound to 28-bp dna substrate (20-nt complementary) (469 kDa, Complex from Chryseobacterium)
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (symmetric 20-nt complementary)
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 8wmn
Q-score: 0.274
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ Pubmed: 38811729 DOI: doi:10.1038/s41586-024-07486-x ]
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Dna (62-mer) (19 kDa, DNA from Chryseobacterium)
- Magnesium ion (24 Da, Ligand)
- Pcriic1 (15 kDa, Protein from Chryseobacterium)
- Structure of cbcas9-pcriic1 complex bound to 62-bp dna substrate (symmetric 20-nt complementary) (471 kDa, Complex from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (non-targeting complex)
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8wr4
Q-score: 0.289
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ Pubmed: 38811729 DOI: doi:10.1038/s41586-024-07486-x ]
- Sgrna effector-2 (40 kDa, RNA from Chryseobacterium)
- Cbcas9 effector-1 (170 kDa, Protein from Chryseobacterium)
- Magnesium ion (24 Da, Ligand)
- Pcriic1 (15 kDa, Protein from Chryseobacterium)
- Structure of cbcas9-pcriic1 complex bound to 62-bp dna substrate (non-targeting complex) (471 kDa, Complex from Chryseobacterium)
- Dna (62-mer) (19 kDa, DNA from Chryseobacterium)
- Dna (62-mer) (18 kDa, DNA from Chryseobacterium)
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8k0p
Q-score: 0.444
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron DR1 at symmetric pre-cleavage state
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8k0q
Q-score: 0.365
Liu ZX, Zhang S, Zhu HZ, Chen ZH, Yang Y, Li LQ, Lei Y, Liu Y, Li DY, Sun A, Li CP, Tan SQ, Wang GL, Shen JY, Jin S, Gao C, Liu JG
Science (2024) 383 pp. eadh4859-eadh4859 [ DOI: doi:10.1126/science.adh4859 Pubmed: 38301022 ]
- Rna (Complex)
- The anoxybacillus pushchinoensis orf-less group iic intron hyer1 at symmetric pre-cleavage state (Complex from Anoxybacillus pushchinoensis)
- Dna (Complex)
- Dna (2 kDa, DNA from Anoxybacillus pushchinoensis)
- Magnesium ion (24 Da, Ligand)
- Rna (542-mer) (205 kDa, RNA from Anoxybacillus pushchinoensis)
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8k0r
Q-score: 0.356
Liu ZX, Zhang S, Zhu HZ, Chen ZH, Yang Y, Li LQ, Lei Y, Liu Y, Li DY, Sun A, Li CP, Tan SQ, Wang GL, Shen JY, Jin S, Gao C, Liu JG
Science (2024) 383 pp. eadh4859-eadh4859 [ DOI: doi:10.1126/science.adh4859 Pubmed: 38301022 ]
- Rna (Complex)
- Dna (Complex)
- Magnesium ion (24 Da, Ligand)
- Dna (1 kDa, DNA from Anoxybacillus pushchinoensis)
- Rna (542-mer) (205 kDa, RNA from Anoxybacillus pushchinoensis)
- The anoxybacillus pushchinoensis orf-less group iic intron hyer1 at symmetric post cleavge state (Complex from Anoxybacillus pushchinoensis)
The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 8k15
Q-score: 0.563
Liu ZX, Zhang S, Zhu HZ, Chen ZH, Yang Y, Li LQ, Lei Y, Liu Y, Li DY, Sun A, Li CP, Tan SQ, Wang GL, Shen JY, Jin S, Gao C, Liu JG
Science (2024) 383 pp. eadh4859-eadh4859 [ DOI: doi:10.1126/science.adh4859 Pubmed: 38301022 ]
- The streptococcus azizii orf-less group iic intron hyer2 at apo state (Complex from Streptococcus azizii)
- Rna (470-mer) (201 kDa, RNA from Streptococcus azizii)
- Magnesium ion (24 Da, Ligand)
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8k0s
Q-score: 0.298