Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7y6l
Q-score: 0.492
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ab816 heavy chain (28 kDa, Protein from Homo sapiens)
- Ab816 light chain (26 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab816 (560 kDa, Complex from Homo sapiens)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7y6n
Q-score: 0.288
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- Ab803 heavy chain (28 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ab803 light chain (26 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab803 (560 kDa, Complex from Homo sapiens)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7x93
Q-score: 0.486
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab354 (560 kDa, Complex from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab765 heavy chain (28 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ab765 light chain (25 kDa, Protein from Homo sapiens)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7x8y
Q-score: 0.318
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Moriyama S, Takahashi Y, Ishigaki H, Nakayama M, Nguyen CT, Kitagawa Y, Itoh Y, Imai M, Maemura T, Furusawa Y, Ueki H, Iwatsuki-Horimoto K, Ito M, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2022) 25 pp. 105596-105596 [ DOI: doi:10.1016/j.isci.2022.105596 Pubmed: 36406861 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab159 (560 kDa, Complex from Homo sapiens)
- Ab159 light chain (26 kDa, Protein from Homo sapiens)
- Ab159 heavy chain (28 kDa, Protein from Homo sapiens)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7x8z
Q-score: 0.368
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Moriyama S, Takahashi Y, Ishigaki H, Nakayama M, Nguyen CT, Kitagawa Y, Itoh Y, Imai M, Maemura T, Furusawa Y, Ueki H, Iwatsuki-Horimoto K, Ito M, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2022) 25 pp. 105596-105596 [ DOI: doi:10.1016/j.isci.2022.105596 Pubmed: 36406861 ]
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab354 (560 kDa, Complex from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ab188 light chain (27 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab188 heavy chain (28 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Hemagglutinin Influenza A virus (A/Okuda/1957(H2N2) bound with a neutralizing antibody
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7dkj
Q-score: 0.416
Makino-Okamura C, Hata H, Watanabe T, Kim S, Hebrard M, Sato R, Yan M, Onodera T, Takahashi Y, Li Q, Taylor T, Okuno Y, Kurosaki T, Tomabechi Y, Uchikubo-Kamo T, Kamada K, Shirouzu M, Fukuyama H
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin influenza a virus (a/okuda/1957(h2n2) bound with a neutralizing antibody (290 kDa, Complex from Influenza A virus (A/Okuda/1957(H2N2)))
- Fv-clasp heavy chain (23 kDa, Protein from Mus musculus)
- Hemagglutinin (67 kDa, Protein from Influenza A virus (A/Okuda/1957(H2N2)))
- Fv-clasp light chain (21 kDa, Protein from Mus musculus)