Accurate computational design of genetically encoded 3D protein crystals
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 8cwy
Q-score: 0.452
Li Z, Wang S, Nattermann U, Bera AK, Borst AJ, Yaman MY, Bick MJ, Yang EC, Sheffler W, Lee B, Seifert S, Hura GL, Nguyen H, Kang A, Dalal R, Lubner JM, Hsia Y, Haddox H, Courbet A, Dowling Q, Miranda M, Favor A, Etemadi A, Edman NI, Yang W, Weidle C, Sankaran B, Negahdari B, Ross MB, Ginger DS, Baker D
Nat Mater (2023) 22 pp. 1556-1563 [ Pubmed: 37845322 DOI: doi:10.1038/s41563-023-01683-1 ]
- T32-15-1 (49 kDa, Protein from synthetic construct)
- T32-15 (Complex from Escherichia coli)
- T32-15-2 (9 kDa, Protein from synthetic construct)
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8szz
Q-score: 0.591
Li Z, Wang S, Nattermann U, Bera AK, Borst AJ, Yaman MY, Bick MJ, Yang EC, Sheffler W, Lee B, Seifert S, Hura GL, Nguyen H, Kang A, Dalal R, Lubner JM, Hsia Y, Haddox H, Courbet A, Dowling Q, Miranda M, Favor A, Etemadi A, Edman NI, Yang W, Weidle C, Sankaran B, Negahdari B, Ross MB, Ginger DS, Baker D
Nat Mater (2023) 22 pp. 1556-1563 [ Pubmed: 37845322 DOI: doi:10.1038/s41563-023-01683-1 ]
- O32-zl4 component a (8 kDa, Protein from synthetic construct)
- O32-zl4 (764 kDa, Complex from Thermotoga maritima)
- Sodium ion (22 Da, Ligand)
- O32-zl4 component b (23 kDa, Protein from Thermotoga maritima)
Representative cryo-electron tomogram of pRLB-540 mixed with liposomes at pH 8.0
Goldbach N, Benna I, Wicky BIM, Croft JT, Carter L, Bera AK, Nguyen H, Kang A, Sankaran B, Yang EC, Lee KK, Baker D
Protein Sci (2023) 32 pp. e4769-e4769 [ DOI: doi:10.1002/pro.4769 Pubmed: 37632837 ]
Goldbach N, Benna I, Wicky BIM, Croft JT, Carter L, Bera AK, Nguyen H, Kang A, Sankaran B, Yang EC, Lee KK, Baker D
Protein Sci (2023) 32 pp. e4769-e4769 [ DOI: doi:10.1002/pro.4769 Pubmed: 37632837 ]
Goldbach N, Benna I, Wicky BIM, Croft JT, Carter L, Bera AK, Nguyen H, Kang A, Sankaran B, Yang EC, Lee KK, Baker D
Protein Sci (2023) 32 pp. e4769-e4769 [ Pubmed: 37632837 DOI: doi:10.1002/pro.4769 ]
C6HR1_8r: Extendable repeat protein heptamer
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ Pubmed: 37667012 DOI: doi:10.1038/s41557-023-01314-x ]
- C6hr1_8r (302 kDa, Complex from unidentified)
- C6hr1_8r (Protein from unidentified)
C3HR3_8r: Extendable repeat protein trimer
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ Pubmed: 37667012 DOI: doi:10.1038/s41557-023-01314-x ]
- C3hr3_8r (141 kDa, Complex from unidentified)
- C3hr3_8r (Protein from unidentified)
C6HR1_4r: Extendable repeat protein hexamer
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ Pubmed: 37667012 DOI: doi:10.1038/s41557-023-01314-x ]
- C6hr1_4r (145 kDa, Complex from unidentified)
- C6hr1_4r (Protein from unidentified)
C4HR1_8r_shift5: Extendable repeat protein fiber
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ Pubmed: 37667012 DOI: doi:10.1038/s41557-023-01314-x ]
- C4hr1_8r_shift5 (Protein from unidentified)
- C4hr1_8r_shift5 (42 kDa, Complex from unidentified)
C3HR3_9r_shift4: Extendable repeat protein fiber
Resolution: 3.92 Å
EM Method: Helical reconstruction
Fitted PDBs: 8g8i
Q-score: 0.435
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ Pubmed: 37667012 DOI: doi:10.1038/s41557-023-01314-x ]
- C3hr3_8r (141 kDa, Complex from unidentified)
- C3hr3_9r_shift4 (55 kDa, Protein from synthetic construct)