Electron bifurcating hydrogenase - HydABC from A. woodii
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7q4v
Q-score: 0.211
Katsyv A, Kumar A, Saura P, Poverlein MC, Freibert SA, T Stripp S, Jain S, Gamiz-Hernandez AP, Kaila VRI, Muller V, Schuller JM
J Am Chem Soc (2023) 145 pp. 5696-5709 [ DOI: doi:10.1021/jacs.2c11683 Pubmed: 36811855 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Iron hydrogenase hyda1 (63 kDa, Protein from Acetobacterium woodii DSM 1030)
- Flavin mononucleotide (456 Da, Ligand)
- Iron hydrogenase hydc (16 kDa, Protein from Acetobacterium woodii DSM 1030)
- Iron hydrogenase hydb (64 kDa, Protein from Acetobacterium woodii DSM 1030)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Homodimer complex of hydabc trimer (300 MDa, Complex from Acetobacterium woodii DSM 1030)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8a5e
Q-score: 0.409
Katsyv A, Kumar A, Saura P, Poverlein MC, Freibert SA, T Stripp S, Jain S, Gamiz-Hernandez AP, Kaila VRI, Muller V, Schuller JM
J Am Chem Soc (2023) 145 pp. 5696-5709 [ DOI: doi:10.1021/jacs.2c11683 Pubmed: 36811855 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Iron hydrogenase hyda1 (63 kDa, Protein from Acetobacterium woodii DSM 1030)
- Flavin mononucleotide (456 Da, Ligand)
- Iron hydrogenase hydc (16 kDa, Protein from Acetobacterium woodii DSM 1030)
- Iron hydrogenase hydb (64 kDa, Protein from Acetobacterium woodii DSM 1030)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 1,4-dihydronicotinamide adenine dinucleotide (665 Da, Ligand)
- 2 iron/2 sulfur/5 carbonyl/2 water inorganic cluster (355 Da, Ligand)
- Electron bifurcating fe-fe hydrogenase hydabc complex from thermoanaerobacter kivui (348 kDa, Complex from Thermoanaerobacter kivui)
- Zinc ion (65 Da, Ligand)
Resolution: 3.78 Å
EM Method: Single-particle
Fitted PDBs: 7q4w
Q-score: 0.253
Katsyv A, Kumar A, Saura P, Poverlein MC, Freibert SA, T Stripp S, Jain S, Gamiz-Hernandez AP, Kaila VRI, Muller V, Schuller JM
J Am Chem Soc (2023) 145 pp. 5696-5709 [ DOI: doi:10.1021/jacs.2c11683 Pubmed: 36811855 ]
- Homodimer complex of hydabc trimer (350 MDa, Complex from Acetobacterium woodii DSM 1030)
- Iron/sulfur cluster (351 Da, Ligand)
- Iron hydrogenase hyda1 (63 kDa, Protein from Acetobacterium woodii DSM 1030)
- Flavin mononucleotide (456 Da, Ligand)
- Iron hydrogenase hydb (50 kDa, Protein from Acetobacterium woodii DSM 1030)
- Iron hydrogenase hydc (16 kDa, Protein from Acetobacterium woodii DSM 1030)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Zinc ion (65 Da, Ligand)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8a6t
Q-score: 0.46
Katsyv A, Kumar A, Saura P, Poverlein MC, Freibert SA, T Stripp S, Jain S, Gamiz-Hernandez AP, Kaila VRI, Muller V, Schuller JM
J Am Chem Soc (2023) 145 pp. 5696-5709 [ DOI: doi:10.1021/jacs.2c11683 Pubmed: 36811855 ]
- Electron bifurcating hydrogenase subunit hydc (18 kDa, Protein from Thermoanaerobacter kivui)
- Electron bifurcating hydrogenase subunit hyda1 (63 kDa, Protein from Thermoanaerobacter kivui)
- Iron/sulfur cluster (351 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Electron bifurcating hydrogenase subunit hydb (68 kDa, Protein from Thermoanaerobacter kivui)
- Nadp nicotinamide-adenine-dinucleotide phosphate (743 Da, Ligand)
- 2 iron/2 sulfur/5 carbonyl/2 water inorganic cluster (355 Da, Ligand)
- Electron bifurcating fe-fe hydrogenase hydabc complex from thermoanaerobacter kivui (348 kDa, Complex from Thermoanaerobacter kivui)
- Zinc ion (65 Da, Ligand)
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 8bew
Q-score: 0.411
Katsyv A, Kumar A, Saura P, Poverlein MC, Freibert SA, T Stripp S, Jain S, Gamiz-Hernandez AP, Kaila VRI, Muller V, Schuller JM
J Am Chem Soc (2023) 145 pp. 5696-5709 [ DOI: doi:10.1021/jacs.2c11683 Pubmed: 36811855 ]
- Electron bifurcating hydrogenase subunit hydc (18 kDa, Protein from Thermoanaerobacter kivui)
- Electron bifurcating hydrogenase subunit hyda1 (63 kDa, Protein from Thermoanaerobacter kivui)
- Iron/sulfur cluster (351 Da, Ligand)
- Dimer of the trimeric hydabc complex (Complex from Thermoanaerobacter kivui)
- Flavin mononucleotide (456 Da, Ligand)
- Electron bifurcating hydrogenase subunit hydb (68 kDa, Protein from Thermoanaerobacter kivui)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of Ldh-EtfAB complex from Acetobacterium woodii
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 7qh2
Q-score: 0.597
Kayastha K, Katsyv A, Himmrich C, Welsch S, Schuller JM, Ermler U, Muller V
eLife (2022) 11 [ Pubmed: 35748623 DOI: doi:10.7554/eLife.77095 ]
- Water (18 Da, Ligand)
- Lactate dehydrogenase (nad(+),ferredoxin) subunit lctc (46 kDa, Protein from Acetobacterium woodii)
- Ldh-etfab complex (220 kDa, Complex from Acetobacterium woodii)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Lactate dehydrogenase (nad(+),ferredoxin) subunit lctd (51 kDa, Protein from Acetobacterium woodii)
- Lactate dehydrogenase (nad(+),ferredoxin) subunit lctb (29 kDa, Protein from Acetobacterium woodii)
- Fe (iii) ion (55 Da, Ligand)