Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 3 closed RBDs
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9crc
Q-score: 0.486
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 1 open RBD
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9crd
Q-score: 0.41
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9cre
Q-score: 0.476
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Severe acute respiratory syndrome coronavirus 2 (Virus from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Alpha (B.1.1.7) variant 1 open RBD
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9crf
Q-score: 0.349
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Gamma (P.1) variant 3 closed RBDs
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9crg
Q-score: 0.456
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9crh
Q-score: 0.441
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Mu (B.1.621) variant 3 closed RBDs
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9cri
Q-score: 0.506
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
In situ structure of the Caulobacter crescentus S-layer
Resolution: 3.5 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8bqe
Q-score: 0.505
Zivanov J, Oton J, Ke Z, von Kugelgen A, Pyle E, Qu K, Morado D, Castano-Diez D, Zanetti G, Bharat TAM, Briggs JAG, Scheres SHW
eLife (2022) 11 [ Pubmed: 36468689 DOI: doi:10.7554/eLife.83724 ]
- Caulobacter crescentus s-layer (Cellular component from Caulobacter vibrioides NA1000)
- S-layer protein rsaa (98 kDa, Protein from Caulobacter vibrioides NA1000)
- Calcium ion (40 Da, Ligand)
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6zwv
Q-score: 0.402
Ke Z, Oton J, Qu K, Cortese M, Zila V, McKeane L, Nakane T, Zivanov J, Neufeldt CJ, Cerikan B, Lu JM, Peukes J, Xiong X, Krausslich HG, Scheres SHW, Bartenschlager R, Briggs JAG
Nature (2020) 588 pp. 498-502 [ Pubmed: 32805734 DOI: doi:10.1038/s41586-020-2665-2 ]
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6zox
Q-score: 0.477
Xiong X, Qu K, Ciazynska KA, Hosmillo M, Carter AP, Ebrahimi S, Ke Z, Scheres SHW, Bergamaschi L, Grice GL, Zhang Y, Nathan JA, Baker S, James LC, Baxendale HE, Goodfellow I, Doffinger R, Briggs JAG
Nat Struct Mol Biol (2020) 27 pp. 934-941 [ Pubmed: 32737467 DOI: doi:10.1038/s41594-020-0478-5 ]