Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 3 closed RBDs
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9crc
Q-score: 0.486
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 1 open RBD
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9crd
Q-score: 0.41
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9cre
Q-score: 0.476
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Severe acute respiratory syndrome coronavirus 2 (Virus from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Alpha (B.1.1.7) variant 1 open RBD
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9crf
Q-score: 0.349
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Gamma (P.1) variant 3 closed RBDs
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9crg
Q-score: 0.456
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9crh
Q-score: 0.441
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Mu (B.1.621) variant 3 closed RBDs
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9cri
Q-score: 0.506
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
In situ structure of the Caulobacter crescentus S-layer
Resolution: 3.5 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8bqe
Q-score: 0.505
Zivanov J, Oton J, Ke Z, von Kugelgen A, Pyle E, Qu K, Morado D, Castano-Diez D, Zanetti G, Bharat TAM, Briggs JAG, Scheres SHW
eLife (2022) 11 [ DOI: doi:10.7554/eLife.83724 Pubmed: 36468689 ]
- S-layer protein rsaa (98 kDa, Protein from Caulobacter vibrioides NA1000)
- Calcium ion (40 Da, Ligand)
- Caulobacter crescentus s-layer (Cellular component from Caulobacter vibrioides NA1000)
Immature HIV-1 matrix structure
Resolution: 7.2 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7ovq
Q-score: 0.232
Qu K, Ke Z, Zila V, Anders-Osswein M, Glass B, Mucksch F, Muller R, Schultz C, Muller B, Krausslich HG, Briggs JAG
Science (2021) 373 pp. 700-704 [ DOI: doi:10.1126/science.abe6821 Pubmed: 34353956 ]
- Gag polyprotein (13 kDa, Protein from Human immunodeficiency virus 1)
- Myristic acid (228 Da, Ligand)
- Human immunodeficiency virus 1 (Virus from Human immunodeficiency virus 1)
Resolution: 7.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7ovr
Q-score: 0.245
Qu K, Ke Z, Zila V, Anders-Osswein M, Glass B, Mucksch F, Muller R, Schultz C, Muller B, Krausslich HG, Briggs JAG
Science (2021) 373 pp. 700-704 [ DOI: doi:10.1126/science.abe6821 Pubmed: 34353956 ]
- Human immunodeficiency virus 1 (Virus from Human immunodeficiency virus 1)
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Myristic acid (228 Da, Ligand)
- Hiv-1 matrix (13 kDa, Protein from Human immunodeficiency virus 1)