Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9cre
Q-score: 0.476
Ke Z, Peacock TP, Brown JC, Sheppard CM, Croll TI, Kotecha A, Goldhill DH, Barclay WS, Briggs JAG
EMBO J (2024) 43 pp. 6469-6495 [ Pubmed: 39543395 DOI: doi:10.1038/s44318-024-00303-1 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Severe acute respiratory syndrome coronavirus 2 (Virus from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zinc ion (65 Da, Ligand)
In situ structure of the Caulobacter crescentus S-layer
Resolution: 3.5 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8bqe
Q-score: 0.505
Zivanov J, Oton J, Ke Z, von Kugelgen A, Pyle E, Qu K, Morado D, Castano-Diez D, Zanetti G, Bharat TAM, Briggs JAG, Scheres SHW
eLife (2022) 11 [ Pubmed: 36468689 DOI: doi:10.7554/eLife.83724 ]
- Caulobacter crescentus s-layer (Cellular component from Caulobacter vibrioides NA1000)
- S-layer protein rsaa (98 kDa, Protein from Caulobacter vibrioides NA1000)
- Calcium ion (40 Da, Ligand)
Immature HIV-1 matrix structure
Resolution: 7.2 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7ovq
Q-score: 0.232
Qu K, Ke Z, Zila V, Anders-Osswein M, Glass B, Mucksch F, Muller R, Schultz C, Muller B, Krausslich HG, Briggs JAG
Science (2021) 373 pp. 700-704 [ Pubmed: 34353956 DOI: doi:10.1126/science.abe6821 ]
- Human immunodeficiency virus 1 (Virus from Human immunodeficiency virus 1)
- Myristic acid (228 Da, Ligand)
- Gag polyprotein (13 kDa, Protein from Human immunodeficiency virus 1)
Resolution: 7.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7ovr
Q-score: 0.245
Qu K, Ke Z, Zila V, Anders-Osswein M, Glass B, Mucksch F, Muller R, Schultz C, Muller B, Krausslich HG, Briggs JAG
Science (2021) 373 pp. 700-704 [ Pubmed: 34353956 DOI: doi:10.1126/science.abe6821 ]
- Human immunodeficiency virus 1 (Virus from Human immunodeficiency virus 1)
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Myristic acid (228 Da, Ligand)
- Hiv-1 matrix (13 kDa, Protein from Human immunodeficiency virus 1)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6zp2
Q-score: 0.507
Xiong X, Qu K, Ciazynska KA, Hosmillo M, Carter AP, Ebrahimi S, Ke Z, Scheres SHW, Bergamaschi L, Grice GL, Zhang Y, Nathan JA, Baker S, James LC, Baxendale HE, Goodfellow I, Doffinger R, Briggs JAG
Nat Struct Mol Biol (2020) 27 pp. 934-941 [ Pubmed: 32737467 DOI: doi:10.1038/s41594-020-0478-5 ]
- Biliverdine ix alpha (582 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (125 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Linoleic acid (280 Da, Ligand)
- Sars-cov-2 spike protein trimer (28 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)