Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 8g4i
Q-score: 0.544
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400-410.e4 [ DOI: doi:10.1016/j.str.2023.12.015 Pubmed: 38242118 ]
- Ribosomal protein s9 (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s17 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s19e (fragment) (17 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s26 (12 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s3a (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s12 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s8p (fragment) (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal subunit of the 80s giardia intestinalis assemblage a ribosome with emetine bound in v1 conformation (Complex from Giardia intestinalis assemblage A)
- Ribosomal protein s20 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s2 (26 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein sa (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s16 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Water (18 Da, Ligand)
- 40s ribosomal protein s7 (23 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s25 (10 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27a (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s21 (9 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s14 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s28 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s4 (30 kDa, Protein from Giardia intestinalis assemblage A)
- Emetine (480 Da, Ligand)
- Ssu ribosomal protein s12p (15 kDa, Protein from Giardia intestinalis assemblage A)
- Magnesium ion (24 Da, Ligand)
- Ssu ribosomal protein s7p (fragment) (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s18 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s6 (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Trna (23 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s13 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 18s rrna (470 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s3 (24 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s8 (19 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s17p (23 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s29a (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s24 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s10b (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s30 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s15 (16 kDa, Protein from Giardia intestinalis assemblage A)
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400-410.e4 [ DOI: doi:10.1016/j.str.2023.12.015 Pubmed: 38242118 ]
80S Giardia lamblia ribosome at 2.66 angstroms resolution with Emetine in the the V1 conformation
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400-410.e4 [ DOI: doi:10.1016/j.str.2023.12.015 Pubmed: 38242118 ]
60S subunit of the Giardia lamblia 80S ribosome
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 8fru
Q-score: 0.648
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400- [ DOI: doi:10.1016/j.str.2023.12.015 Pubmed: 38242118 ]
- 60s ribosomal protein ul30 (27 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul2 (27 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el42 (12 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el30 (11 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el41 (2 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul15 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul4 (35 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el40 (14 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul6 (20 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul24 (15 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el37 (11 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el24 (12 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul18 (33 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el8 (25 kDa, Protein from Giardia intestinalis assemblage A)
- Water (18 Da, Ligand)
- 60s ribosomal protein el39 (6 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul5 (19 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el38 (8 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul22 (18 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal subunit of the 80s giardia intestinalis assemblage a ribosome (Complex from Giardia intestinalis assemblage A)
- 60s ribosomal protein el22 (19 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul3 (42 kDa, Protein from Giardia intestinalis assemblage A)
- Zinc ion (65 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- 60s ribosomal protein ul14 (15 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el19 (23 kDa, Protein from Giardia intestinalis assemblage A)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein ul16 (24 kDa, Protein from Giardia intestinalis assemblage A)
- Potassium ion (39 Da, Ligand)
- 60s ribosomal protein el31 (12 kDa, Protein from Giardia intestinalis assemblage A)
- 5s rrna (38 kDa, RNA from Giardia intestinalis assemblage A)
- 60s ribosomal protein el32 (15 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul29 (14 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul23 (16 kDa, Protein from Giardia intestinalis assemblage A)
- Spermidine (145 Da, Ligand)
- 60s ribosomal protein el34 (13 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el36 (10 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el20 (24 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el21 (18 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el43 (10 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein ul13 (22 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el14 (14 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el27 (15 kDa, Protein from Giardia intestinalis assemblage A)
- 5.8s rrna (45 kDa, RNA from Giardia intestinalis assemblage A)
- 60s ribosomal protein el13 (26 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el15 (24 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el29 (7 kDa, Protein from Giardia intestinalis assemblage A)
- 28s rrna (871 kDa, RNA from Giardia intestinalis assemblage A)
- 60s ribosomal protein el18 (20 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal protein el33 (13 kDa, Protein from Giardia intestinalis assemblage A)
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8g4s
Q-score: 0.51
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400- [ DOI: doi:10.1016/j.str.2023.12.015 Pubmed: 38242118 ]
- Ribosomal protein s9 (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s17 (15 kDa, Protein from Giardia intestinalis assemblage A)
- E-site trna (23 kDa, RNA from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s19e (fragment) (17 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s26 (12 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s3a (28 kDa, Protein from Giardia intestinalis assemblage A)
- P-site trna (24 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s12 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s8p (fragment) (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal subunit of the 80s giardia intestinalis assemblage a ribosome with emetine bound in v1 conformation (Complex from Giardia intestinalis assemblage A)
- Ribosomal protein s20 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s2 (26 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein sa (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s16 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Water (18 Da, Ligand)
- 40s ribosomal protein s7 (23 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s25 (10 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27a (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s21 (9 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s14 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s28 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s4 (30 kDa, Protein from Giardia intestinalis assemblage A)
- Mrna (2 kDa, RNA from Giardia intestinalis assemblage A)
- Emetine (480 Da, Ligand)
- Ssu ribosomal protein s12p (15 kDa, Protein from Giardia intestinalis assemblage A)
- Magnesium ion (24 Da, Ligand)
- Ssu ribosomal protein s7p (fragment) (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s18 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s6 (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27 (14 kDa, Protein from Giardia intestinalis assemblage A)
- A-site trna (24 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s13 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 18s rrna (470 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s3 (24 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s8 (19 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s17p (23 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s29a (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s24 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s10b (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s30 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s15 (16 kDa, Protein from Giardia intestinalis assemblage A)
80S Giardia lamblia ribosome at 2.67 angstroms resolution with Emetine in the the V2 conformation
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400-410.e4 [ DOI: doi:10.1016/j.str.2023.12.015 Pubmed: 38242118 ]
40S subunit of the Giardia lamblia 80S ribosome
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8fvy
Q-score: 0.51
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400- [ DOI: doi:10.1016/j.str.2023.12.015 Pubmed: 38242118 ]
- Ribosomal protein s9 (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s17 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s19e (fragment) (17 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s26 (12 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s3a (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s12 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s8p (fragment) (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s20 (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein sa (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s2 (26 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s16 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Water (18 Da, Ligand)
- 40s ribosomal protein s7 (23 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s25 (10 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27a (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s21 (9 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s14 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s28 (7 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal subunit of the 80s giardia intestinalis assemblage a ribosome (Complex from Giardia intestinalis assemblage A)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s4 (30 kDa, Protein from Giardia intestinalis assemblage A)
- Emetine (480 Da, Ligand)
- Ssu ribosomal protein s12p (15 kDa, Protein from Giardia intestinalis assemblage A)
- Magnesium ion (24 Da, Ligand)
- Ssu ribosomal protein s7p (fragment) (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s18 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s6 (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Trna (23 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s13 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 18s rrna (470 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s3 (24 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s8 (19 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s17p (23 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s29a (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s24 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s10b (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s30 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s15 (16 kDa, Protein from Giardia intestinalis assemblage A)
Tetrahymena Ribozyme scaffolded Zika Virus xrRNA
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8tjq
Q-score: 0.395
Nucleic Acids Res (2023) 51 pp. e100-e100 [ Pubmed: 37791881 DOI: doi:10.1093/nar/gkad784 ]
- Rna (440-mer) (142 kDa, RNA from Zika virus)
- Tetrahymena ribozyme scaffolded zika virus xrrna (Complex from Tetrahymena)
- Magnesium ion (24 Da, Ligand)
Tetrahymena Ribozyme scaffolded TABV xrRNA
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 8tju
Q-score: 0.362
Nucleic Acids Res (2023) 51 pp. e100-e100 [ Pubmed: 37791881 DOI: doi:10.1093/nar/gkad784 ]
- Dna/rna (416-mer) (134 kDa, Macromolecule from Tamana bat virus)
- Magnesium ion (24 Da, Ligand)
- Tetrahymena ribozyme scaffolded tabv xrrna (Complex from Tetrahymena)
Tetrahymena Ribozyme scaffolded Fluoride riboswitch
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8tjv
Q-score: 0.456
Nucleic Acids Res (2023) 51 pp. e100-e100 [ Pubmed: 37791881 DOI: doi:10.1093/nar/gkad784 ]
- Magnesium ion (24 Da, Ligand)
- Fluoride ion (18 Da, Ligand)
- Rna (417-mer) (134 kDa, RNA from Thermotoga petrophila)
- Potassium ion (39 Da, Ligand)
- Tetrahymena ribozyme scaffolded fluoride riboswitch (Complex from Tetrahymena)