Cryo-EM Structure of Mouse TLR4/MD-2/DLAM3 Complex
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8wry
Q-score: 0.533
To Be Published
- (3r)-3-(tetradecanoyloxy)tetradecanoic acid (454 Da, Ligand)
- 2-(hydroxymethyl)-5-methoxy-3,6-bis(oxidanyl)pyran-4-one (188 Da, Ligand)
- 2-amino-2-deoxy-4-o-phosphono-alpha-d-glucopyranose (259 Da, Ligand)
- Lymphocyte antigen 96 (16 kDa, Protein from Mus musculus)
- (3r)-3-(dodecanoyloxy)tetradecanoic acid (426 Da, Ligand)
- Toll-like receptor 4 (68 kDa, Protein from Mus musculus)
- Mouse tlr4/md2/dlam3 complex (Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM Structure of Mouse TLR4/MD-2/DLAM5 Complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8wsa
Q-score: 0.475
To Be Published
- [(2~{r},3~{s},4~{r},5~{s})-2-(hydroxymethyl)-5-methoxy-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate (274 Da, Ligand)
- Mouse tlr4/md2/dlam5 complex (Complex from Mus musculus)
- (3~{s})-3-decanoyloxytetradecanoic acid (398 Da, Ligand)
- (3r)-3-(tetradecanoyloxy)tetradecanoic acid (454 Da, Ligand)
- 2-amino-2-deoxy-4-o-phosphono-alpha-d-glucopyranose (259 Da, Ligand)
- Lymphocyte antigen 96 (16 kDa, Protein from Mus musculus)
- (3r)-3-(dodecanoyloxy)tetradecanoic acid (426 Da, Ligand)
- Toll-like receptor 4 (68 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM Structure of Human TLR4/MD-2/DLAM3 Complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8wta
Q-score: 0.474
To Be Published
- Lymphocyte antigen 96 (16 kDa, Protein from Homo sapiens)
- (3r)-3-(tetradecanoyloxy)tetradecanoic acid (454 Da, Ligand)
- 2-(hydroxymethyl)-5-methoxy-3,6-bis(oxidanyl)pyran-4-one (188 Da, Ligand)
- 2-amino-2-deoxy-4-o-phosphono-alpha-d-glucopyranose (259 Da, Ligand)
- (3r)-3-(dodecanoyloxy)tetradecanoic acid (426 Da, Ligand)
- Toll-like receptor 4 (68 kDa, Protein from Homo sapiens)
- Human tlr4/md2/dlam3 complex (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Asymmetric unit of bacteriophage PhiM1 mature capsid
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8vb0
Q-score: 0.578
Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M
Pnas Nexus (2024) 3 pp. pgae416-pgae416 [ DOI: doi:10.1093/pnasnexus/pgae416 Pubmed: 39351541 ]
- Pectobacterium phage phim1 (Virus from Pectobacterium phage PhiM1)
- Alpha-paw decoration protein (gp43) (17 kDa, Protein from Pectobacterium phage PhiM1)
- Alpha-claw decoration protein (gp44) (6 kDa, Protein from Pectobacterium phage PhiM1)
- Major capsid protein (gp38) (36 kDa, Protein from Pectobacterium phage PhiM1)
C4 pre-infection ejectosome of the mature bacteriophage PhiM1 particle
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8vb2
Q-score: 0.498
Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M
Pnas Nexus (2024) 3 pp. pgae416-pgae416 [ DOI: doi:10.1093/pnasnexus/pgae416 Pubmed: 39351541 ]
- Pectobacterium phage phim1 (Virus from Pectobacterium phage PhiM1)
- Tetrameric ejection protein (gp48) (135 kDa, Protein from Pectobacterium phage PhiM1)
- Octameric ejection protein (gp49) (98 kDa, Protein from Pectobacterium phage PhiM1)
- Ejection protein 3 (gp50) (21 kDa, Protein from Pectobacterium phage PhiM1)
C12 portal and adaptor complex of the mature bacteriophage PhiM1 particle
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8vb4
Q-score: 0.534
Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M
Pnas Nexus (2024) 3 pp. pgae416-pgae416 [ DOI: doi:10.1093/pnasnexus/pgae416 Pubmed: 39351541 ]
- Portal protein (gp35) (55 kDa, Protein from Pectobacterium phage PhiM1)
- Pectobacterium phage phim1 (Virus from Pectobacterium phage PhiM1)
- Adaptor protein (gp52) (21 kDa, Protein from Pectobacterium phage PhiM1)
C6 nozzle and fibre complex of the mature bacteriophage PhiM1 particle
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8vbx
Q-score: 0.535
Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M
Pnas Nexus (2024) 3 pp. pgae416-pgae416 [ DOI: doi:10.1093/pnasnexus/pgae416 Pubmed: 39351541 ]
- Pectobacterium phage phim1 (Virus from Pectobacterium phage PhiM1)
- Tail nozzle (gp51) (84 kDa, Protein from Pectobacterium phage PhiM1)
- Tail fiber (gp47) (55 kDa, Protein from Pectobacterium phage PhiM1)