CryoEM structure of SARS CoV-2 RBD and Aptamer complex
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8j1q
Q-score: 0.401
Rahman MS, Han MJ, Kim SW, Kang SM, Kim BR, Kim H, Lee CJ, Noh JE, Kim H, Lee JO, Jang SK
Molecules (2023) 28 [ Pubmed: 37375202 DOI: doi:10.3390/molecules28124645 ]
- Spike protein s1 (28 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Am032-0 (26 kDa, DNA from synthetic construct)
- Am047-0 (18 kDa, DNA from synthetic construct)
- Rbd_fab_am032_am047 complex (124 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab heavy chain (regn10987) (26 kDa, Protein from Homo sapiens)
- Fab light chain (regn10987) (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
CryoEM structure of SARS CoV-2 RBD and Aptamer complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8j26
Q-score: 0.428
Rahman MS, Han MJ, Kim SW, Kang SM, Kim BR, Kim H, Lee CJ, Noh JE, Kim H, Lee JO, Jang SK
Molecules (2023) 28 [ Pubmed: 37375202 DOI: doi:10.3390/molecules28124645 ]
- Spike protein s1 (28 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Am047-6 (16 kDa, DNA from synthetic construct)
- Fab light chain (regn10987) (23 kDa, Protein from Homo sapiens)
- Am032-4 (15 kDa, DNA from synthetic construct)
- Fab heavy chain (regn10987) (26 kDa, Protein from Homo sapiens)
- Rbd_fab_am032-4_am047-6 complex (111 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of BsClpP-ADEP1 complex at pH 6.5
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7fep
Q-score: 0.543
Kim L, Lee BG, Kim M, Kim MK, Kwon DH, Kim H, Brotz-Oesterhelt H, Roh SH, Song HK
EMBO J (2022) 41 pp. e109755-e109755 [ Pubmed: 35593068 DOI: doi:10.15252/embj.2021109755 ]
- Adep1 (Complex)
- Cryo-em structure of bsclpp-adep1 complex at ph 6.5 (Complex)
- Bsclpp (Complex from Bacillus subtilis)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Bacillus subtilis)
- Adep1 (736 Da, Protein from synthetic construct)
Cryo-EM structure of BsClpP-ADEP1 complex at pH 4.2
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7fer
Q-score: 0.443
Kim L, Lee BG, Kim M, Kim MK, Kwon DH, Kim H, Brotz-Oesterhelt H, Roh SH, Song HK
EMBO J (2022) 41 pp. e109755-e109755 [ Pubmed: 35593068 DOI: doi:10.15252/embj.2021109755 ]
- Cryo-em structure of bsclpp-adep1 complex at ph 4.2 (Complex)
- Adep1 (Complex)
- Bsclpp (Complex from Bacillus subtilis)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Bacillus subtilis)
- Adep1 (736 Da, Protein from synthetic construct)
Cryo-EM structure of MLL1 in complex with RbBP5 and WDR5 bound to the nucleosome
Resolution: 6.2 Å
EM Method: Single-particle
Fitted PDBs: 6pwv
Q-score: 0.188
Park SH, Ayoub A, Lee YT, Xu J, Kim H, Zheng W, Zhang B, Sha L, An S, Zhang Y, Cianfrocco MA, Su M, Dou Y, Cho US
Nat Commun (2019) 10 pp. 5540-5540 [ Pubmed: 31804488 DOI: doi:10.1038/s41467-019-13550-2 ]
- Protein dpy-30 homolog (11 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Set1/ash2 histone methyltransferase complex subunit ash2 (60 kDa, Protein from Homo sapiens)
- Retinoblastoma-binding protein 5 (59 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from synthetic construct)
- Wd repeat-containing protein 5 (34 kDa, Protein from Homo sapiens)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Histone-lysine n-methyltransferase 2a (24 kDa, Protein from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Human mll1 complex bound to the nucleosome (Complex from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- Dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Cryo-EM structure of MLL1 in complex with RbBP5 and WDR5 bound to the nucleosome
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6pww
Q-score: 0.26
Park SH, Ayoub A, Lee YT, Xu J, Kim H, Zheng W, Zhang B, Sha L, An S, Zhang Y, Cianfrocco MA, Su M, Dou Y, Cho US
Nat Commun (2019) 10 pp. 5540-5540 [ Pubmed: 31804488 DOI: doi:10.1038/s41467-019-13550-2 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Rbbp5, wdr5, and mll1 in complex with the nucleosome (Complex from Xenopus laevis)
- Dna (146-mer) (45 kDa, DNA from synthetic construct)
- Retinoblastoma-binding protein 5 (59 kDa, Protein from Homo sapiens)
- Wd repeat-containing protein 5 (34 kDa, Protein from Homo sapiens)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Histone-lysine n-methyltransferase 2a (24 kDa, Protein from Homo sapiens)
- Dna (146-mer) (45 kDa, DNA from synthetic construct)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Cryo-EM structure of RbBP5 bound to the nucleosome
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6pwx
Q-score: 0.332
Park SH, Ayoub A, Lee YT, Xu J, Kim H, Zheng W, Zhang B, Sha L, An S, Zhang Y, Cianfrocco MA, Su M, Dou Y, Cho US
Nat Commun (2019) 10 pp. 5540-5540 [ Pubmed: 31804488 DOI: doi:10.1038/s41467-019-13550-2 ]
- Rbbp5 in complex with the nucleosome (Complex from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (146-mer) (45 kDa, DNA from synthetic construct)
- Retinoblastoma-binding protein 5 (59 kDa, Protein from Homo sapiens)
- Dna (146-mer) (45 kDa, DNA from synthetic construct)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)