TRIF TIR Filament Cryo-EM Structure
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 9dk8
Q-score: 0.47
Cryo-EM structure of human SOD1 (WT) amyloid filament
Resolution: 3.39 Å
EM Method: Helical reconstruction
Fitted PDBs: 9jbo
Q-score: 0.475
Baek Y, Kim H, Lee D, Kim D, Jo E, Roh SH, Ha NC
PNAS (2025) 122 pp. e2408582122-e2408582122 [ DOI: doi:10.1073/pnas.2408582122 Pubmed: 39874287 ]
- Superoxide dismutase [cu-zn] (16 kDa, Protein from Homo sapiens)
- Amyloid filament of human wild-type sod1 protein (34 MDa, Complex from Homo sapiens)
Cryo-EM structure of human SOD1 (C6A/C111A) amyloid filament
Resolution: 3.18 Å
EM Method: Helical reconstruction
Fitted PDBs: 9jbp
Q-score: 0.488
Baek Y, Kim H, Lee D, Kim D, Jo E, Roh SH, Ha NC
PNAS (2025) 122 pp. e2408582122-e2408582122 [ DOI: doi:10.1073/pnas.2408582122 Pubmed: 39874287 ]
- Superoxide dismutase [cu-zn] (16 kDa, Protein from Homo sapiens)
- Unassigned poly-alanine model (698 Da, Protein from Homo sapiens)
- Amyloid filament of human c6a/c111a mutant sod1 protein (69 MDa, Complex from Homo sapiens)
Cryo-EM Structure of Mouse TLR4/MD-2/DLAM5 Complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8wsa
Q-score: 0.475
To Be Published
- Toll-like receptor 4 (68 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2-amino-2-deoxy-4-o-phosphono-alpha-d-glucopyranose (259 Da, Ligand)
- [(2~{r},3~{s},4~{r},5~{s})-2-(hydroxymethyl)-5-methoxy-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate (274 Da, Ligand)
- (3r)-3-(tetradecanoyloxy)tetradecanoic acid (454 Da, Ligand)
- Mouse tlr4/md2/dlam5 complex (Complex from Mus musculus)
- (3~{s})-3-decanoyloxytetradecanoic acid (398 Da, Ligand)
- Lymphocyte antigen 96 (16 kDa, Protein from Mus musculus)
- (3r)-3-(dodecanoyloxy)tetradecanoic acid (426 Da, Ligand)
Asymmetric unit of bacteriophage PhiM1 mature capsid
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8vb0
Q-score: 0.578
Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M
Pnas Nexus (2024) 3 pp. pgae416-pgae416 [ DOI: doi:10.1093/pnasnexus/pgae416 Pubmed: 39351541 ]
- Alpha-claw decoration protein (gp44) (6 kDa, Protein from Pectobacterium phage PhiM1)
- Alpha-paw decoration protein (gp43) (17 kDa, Protein from Pectobacterium phage PhiM1)
- Major capsid protein (gp38) (36 kDa, Protein from Pectobacterium phage PhiM1)
- Pectobacterium phage phim1 (Virus from Pectobacterium phage PhiM1)
C4 pre-infection ejectosome of the mature bacteriophage PhiM1 particle
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8vb2
Q-score: 0.498
Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M
Pnas Nexus (2024) 3 pp. pgae416-pgae416 [ DOI: doi:10.1093/pnasnexus/pgae416 Pubmed: 39351541 ]
- Octameric ejection protein (gp49) (98 kDa, Protein from Pectobacterium phage PhiM1)
- Tetrameric ejection protein (gp48) (135 kDa, Protein from Pectobacterium phage PhiM1)
- Ejection protein 3 (gp50) (21 kDa, Protein from Pectobacterium phage PhiM1)
- Pectobacterium phage phim1 (Virus from Pectobacterium phage PhiM1)
C6 nozzle and fibre complex of the mature bacteriophage PhiM1 particle
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8vbx
Q-score: 0.535
Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M
Pnas Nexus (2024) 3 pp. pgae416-pgae416 [ DOI: doi:10.1093/pnasnexus/pgae416 Pubmed: 39351541 ]
- Tail fiber (gp47) (55 kDa, Protein from Pectobacterium phage PhiM1)
- Tail nozzle (gp51) (84 kDa, Protein from Pectobacterium phage PhiM1)
- Pectobacterium phage phim1 (Virus from Pectobacterium phage PhiM1)
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 8jps
Q-score: 0.353
Saha S, Khanppnavar B, Maharana J, Kim H, Carino CMC, Daly C, Houston S, Sharma S, Zaidi N, Dalal A, Mishra S, Ganguly M, Tiwari D, Kumari P, Jhingan GD, Yadav PN, Plouffe B, Inoue A, Chung KY, Banerjee R, Korkhov VM, Shukla AK
Cell (2024) 187 pp. 4751-4769.e25 [ DOI: doi:10.1016/j.cell.2024.07.005 Pubmed: 39089252 ]
- Duffy antigen receptor for chemokines (darc)/ackr1 in complex with the chemokine, ccl7 (Complex from Homo sapiens)
- Duffy antigen receptor for chemokines (darc)/ackr1 (Complex)
- C-c motif chemokine 7 (7 kDa, Protein from Homo sapiens)
- Ccl7 (Complex)
- Atypical chemokine receptor 1 (28 kDa, Protein from Homo sapiens)
Saha S, Khanppnavar B, Maharana J, Kim H, Carino CMC, Daly C, Houston S, Sharma S, Zaidi N, Dalal A, Mishra S, Ganguly M, Tiwari D, Kumari P, Jhingan GD, Yadav PN, Plouffe B, Inoue A, Chung KY, Banerjee R, Korkhov VM, Shukla AK
Cell (2024) 187 pp. 4751-4769.e25 [ DOI: doi:10.1016/j.cell.2024.07.005 Pubmed: 39089252 ]