Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 8h86
Q-score: 0.661
Tajima S, Kim YS, Fukuda M, Jo Y, Wang PY, Paggi JM, Inoue M, Byrne EFX, Kishi KE, Nakamura S, Ramakrishnan C, Takaramoto S, Nagata T, Konno M, Sugiura M, Katayama K, Matsui TE, Yamashita K, Kim S, Ikeda H, Kim J, Kandori H, Dror RO, Inoue K, Deisseroth K, Kato HE
Cell (2023) 186 pp. 4325-4344.e26 [ DOI: doi:10.1016/j.cell.2023.08.009 Pubmed: 37652010 ]
- Palmitic acid (256 Da, Ligand)
- Retinal (284 Da, Ligand)
- Hckcr1 (Complex from Hyphochytrium catenoides)
- (7r,17e,20e)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosa-17,20-dien-1-aminium 4-oxide (759 Da, Ligand)
- Hckcr1 (31 kDa, Protein from Hyphochytrium catenoides)
- Water (18 Da, Ligand)
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 8h87
Q-score: 0.682
Tajima S, Kim YS, Fukuda M, Jo Y, Wang PY, Paggi JM, Inoue M, Byrne EFX, Kishi KE, Nakamura S, Ramakrishnan C, Takaramoto S, Nagata T, Konno M, Sugiura M, Katayama K, Matsui TE, Yamashita K, Kim S, Ikeda H, Kim J, Kandori H, Dror RO, Inoue K, Deisseroth K, Kato HE
Cell (2023) 186 pp. 4325-4344.e26 [ DOI: doi:10.1016/j.cell.2023.08.009 Pubmed: 37652010 ]
- Palmitic acid (256 Da, Ligand)
- Retinal (284 Da, Ligand)
- Hckcr2 (Complex from Hyphochytrium catenoides)
- Hckcr2 (34 kDa, Protein from Hyphochytrium catenoides)
- (7r,17e,20e)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosa-17,20-dien-1-aminium 4-oxide (759 Da, Ligand)
- Water (18 Da, Ligand)
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 8iu0
Q-score: 0.636
Tajima S, Kim YS, Fukuda M, Jo Y, Wang PY, Paggi JM, Inoue M, Byrne EFX, Kishi KE, Nakamura S, Ramakrishnan C, Takaramoto S, Nagata T, Konno M, Sugiura M, Katayama K, Matsui TE, Yamashita K, Kim S, Ikeda H, Kim J, Kandori H, Dror RO, Inoue K, Deisseroth K, Kato HE
Cell (2023) 186 pp. 4325-4344.e26 [ DOI: doi:10.1016/j.cell.2023.08.009 Pubmed: 37652010 ]
- Palmitic acid (256 Da, Ligand)
- Retinal (284 Da, Ligand)
- Hckcr1 (31 kDa, Protein from Hyphochytrium catenoides)
- Hckcr1 (Complex from Hyphochytrium catenoides)
- (7r,17e,20e)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosa-17,20-dien-1-aminium 4-oxide (759 Da, Ligand)
- Water (18 Da, Ligand)
human insulin receptor bound with A43 DNA aptamer and insulin
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7yq3
Q-score: 0.454
Kim J, Yunn NO, Park M, Kim J, Park S, Kim Y, Noh J, Ryu SH, Cho Y
Nat Commun (2022) 13 pp. 6500-6500 [ DOI: doi:10.1038/s41467-022-34292-8 Pubmed: 36310231 ]
- Insulin a chain (2 kDa, Protein from Homo sapiens)
- Dna 28mer (Complex)
- Receptor-ligand complex (Complex from Homo sapiens)
- Insulin, insulin receptor (Complex)
- Insulin, isoform 2 (2 kDa, Protein from Homo sapiens)
- Isoform short of insulin receptor (103 kDa, Protein from Homo sapiens)
- Ir-a43 aptamer (9 kDa, DNA from synthetic construct)
human insulin receptor bound with A62 DNA aptamer and insulin - locally refined
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 7yq4
Q-score: 0.41
Kim J, Yunn NO, Park M, Kim J, Park S, Kim Y, Noh J, Ryu SH, Cho Y
Nat Commun (2022) 13 pp. 6500-6500 [ DOI: doi:10.1038/s41467-022-34292-8 Pubmed: 36310231 ]
- Dna (Complex)
- Insulin a chain (2 kDa, Protein from Homo sapiens)
- Ir-a62 aptamer (8 kDa, DNA from synthetic construct)
- Receptor-ligand-complex_b_local (Complex)
- Insulin, isoform 2 (2 kDa, Protein from Homo sapiens)
- Isoform short of insulin receptor (103 kDa, Protein from Homo sapiens)
- Insulin, insulin receptor (Complex from Homo sapiens)
human insulin receptor bound with A62 DNA aptamer and insulin
Resolution: 4.27 Å
EM Method: Single-particle
Fitted PDBs: 7yq5
Q-score: 0.294
Kim J, Yunn NO, Park M, Kim J, Park S, Kim Y, Noh J, Ryu SH, Cho Y
Nat Commun (2022) 13 pp. 6500-6500 [ DOI: doi:10.1038/s41467-022-34292-8 Pubmed: 36310231 ]
- Dna (Complex)
- Insulin a chain (2 kDa, Protein from Homo sapiens)
- Receptor-ligand-complex_b_overall (Complex)
- Ir-a62 aptamer (8 kDa, DNA from synthetic construct)
- Insulin, isoform 2 (2 kDa, Protein from Homo sapiens)
- Isoform short of insulin receptor (103 kDa, Protein from Homo sapiens)
- Insulin, insulin receptor (Complex from Homo sapiens)
human insulin receptor bound with A62 DNA aptamer
Resolution: 4.18 Å
EM Method: Single-particle
Fitted PDBs: 7yq6
Q-score: 0.309
Kim J, Yunn NO, Park M, Kim J, Park S, Kim Y, Noh J, Ryu SH, Cho Y
Nat Commun (2022) 13 pp. 6500-6500 [ DOI: doi:10.1038/s41467-022-34292-8 Pubmed: 36310231 ]
- Insulin receptor (Complex from Homo sapiens)
- Dna (Complex)
- Ir-a62 aptamer (8 kDa, DNA from synthetic construct)
- Isoform short of insulin receptor (103 kDa, Protein from Homo sapiens)
- Receptor_ligand complex c (Complex)
human insulin receptor bound with two insulin molecules
Resolution: 4.18 Å
EM Method: Single-particle
Fitted PDBs: 8guy
Q-score: 0.314
Kim J, Yunn NO, Park M, Kim J, Park S, Kim Y, Noh J, Ryu SH, Cho Y
Nat Commun (2022) 13 pp. 6500-6500 [ DOI: doi:10.1038/s41467-022-34292-8 Pubmed: 36310231 ]
- Receptor-ligand complex (Complex)
- Insulin a chain (2 kDa, Protein from Homo sapiens)
- Ligand (Complex from Homo sapiens)
- Receptor_ligand_complex (Complex from Homo sapiens)
- Insulin, isoform 2 (2 kDa, Protein from Homo sapiens)
- Isoform short of insulin receptor (103 kDa, Protein from Homo sapiens)
High resolution structure of FANCA C-terminal domain (CTD)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 6lhs
Q-score: 0.471
Jeong E, Lee SG, Kim HS, Yang J, Shin J, Kim Y, Kim J, Scharer OD, Kim Y, Yeo JE, Kim HM, Cho Y
Nucleic Acids Res (2020) 48 pp. 3328-3342 [ DOI: doi:10.1093/nar/gkaa062 Pubmed: 32002546 ]
- Fanconi anemia complementation group a (163 kDa, Protein from Xenopus laevis)
- Fanconi anemia complementation group a (500 MDa, Complex from Xenopus laevis)
High resolution structure of FANCA C-terminal domain (CTD)
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 6lhu
Q-score: 0.423
Jeong E, Lee SG, Kim HS, Yang J, Shin J, Kim Y, Kim J, Scharer OD, Kim Y, Yeo JE, Kim HM, Cho Y
Nucleic Acids Res (2020) 48 pp. 3328-3342 [ DOI: doi:10.1093/nar/gkaa062 Pubmed: 32002546 ]
- Fanca (500 MDa, Complex from Xenopus laevis)
- Fanconi anemia complementation group a (163 kDa, Protein from Xenopus laevis)