E.coli PNPase in complex with single 8-oxoG RNA
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8vah
Q-score: 0.426
Miller LG, Kim W, Schowe S, Taylor K, Han R, Jain V, Park R, Sherman M, Fang J, Ramirez H, Ellington A, Tamamis P, Resendiz MJE, Zhang YJ, Contreras L
PNAS (2024) 121 pp. e2317865121-e2317865121 [ Pubmed: 39495922 DOI: doi:10.1073/pnas.2317865121 ]
- Polyribonucleotide nucleotidyltransferase (77 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(p*ap*ap*ap*ap*ap*ap*a*a*a)-3') (2 kDa, RNA from Escherichia coli)
- Rna (5'-r(p*ap*cp*ap*(8gm))-3') (1 kDa, RNA from Escherichia coli)
- Pnpase complexed with single 8-oxo g rna (Complex from Escherichia coli)
E.coli PNPase in complex with double 8-oxoG RNA
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8vak
Q-score: 0.413
Miller LG, Kim W, Schowe S, Taylor K, Han R, Jain V, Park R, Sherman M, Fang J, Ramirez H, Ellington A, Tamamis P, Resendiz MJE, Zhang YJ, Contreras L
PNAS (2024) 121 pp. e2317865121-e2317865121 [ Pubmed: 39495922 DOI: doi:10.1073/pnas.2317865121 ]
- Rna (5'-r(p*cp*ap*(8gm)p*(8gm))-3') (1 kDa, RNA from Escherichia coli)
- Polyribonucleotide nucleotidyltransferase (77 kDa, Protein from Escherichia coli)
- Rna (5'-r(p*ap*ap*ap*ap*ap*ap*a*a*a)-3') (2 kDa, RNA from Escherichia coli)
- Pnpase complexed with double 8-oxo g rna (Complex from Escherichia coli)
CryoEM structure of A/Solomon Islands/3/2006 H1 HA in complex with 05.GC.w2.3C10-H1_SI06
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8u44
Q-score: 0.387
McIntire KM, Meng H, Lin TH, Kim W, Moore NE, Han J, McMahon M, Wang M, Malladi SK, Mohammed BM, Zhou JQ, Schmitz AJ, Hoehn KB, Carreno JM, Yellin T, Suessen T, Middleton WD, Teefey SA, Presti RM, Krammer F, Turner JS, Ward AB, Wilson IA, Kleinstein SH, Ellebedy AH
J Exp Med (2024) 221 [ DOI: doi:10.1084/jem.20240668 Pubmed: 38935072 ]
- Ha (Complex from Homo sapiens)
- Fab (Complex from Homo sapiens)
- Immune complex of a/solomon islands/3/2006 h1 ha with fab 3c10 (Complex from Homo sapiens)
- 05.gc.w2.3c10-h1_si06 light chain (25 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin ha2 chain (26 kDa, Protein from Influenza A virus)
- Hemagglutinin ha1 chain (40 kDa, Protein from Influenza A virus)
- 05.gc.w2.3c10-h1_si06 heavy chain (25 kDa, Protein from Homo sapiens)
Structure of 3A10 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8ez3
Q-score: 0.613
Lei R, Kim W, Lv H, Mou Z, Scherm MJ, Schmitz AJ, Turner JS, Tan TJC, Wang Y, Ouyang WO, Liang W, Rivera-Cardona J, Teo C, Graham CS, Brooke CB, Presti RM, Mok CKP, Krammer F, Dai X, Ellebedy AH, Wu NC
Immunity (2023) 56 pp. 2621- [ DOI: doi:10.1016/j.immuni.2023.10.005 Pubmed: 37967533 ]
- Heavy chain of influenza virus neuraminidase antibody 3a10 (13 kDa, Protein from Homo sapiens)
- Structure of 3a10 fab in complex with a/moscow/10/1999 (h3n2) influenza virus neuraminidase (Complex from Influenza A virus)
- Alpha-d-mannopyranose (180 Da, Ligand)
- Light chain of influenza virus neuraminidase antibody 3a10 (11 kDa, Protein from Homo sapiens)
- Neuraminidase (42 kDa, Protein from Influenza A virus (A/Moscow/10/1999(H3N2)))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of 1F04 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8ez7
Q-score: 0.638
Lei R, Kim W, Lv H, Mou Z, Scherm MJ, Schmitz AJ, Turner JS, Tan TJC, Wang Y, Ouyang WO, Liang W, Rivera-Cardona J, Teo C, Graham CS, Brooke CB, Presti RM, Mok CKP, Krammer F, Dai X, Ellebedy AH, Wu NC
Immunity (2023) 56 pp. 2621- [ DOI: doi:10.1016/j.immuni.2023.10.005 Pubmed: 37967533 ]
- Alpha-d-mannopyranose (180 Da, Ligand)
- Neuraminidase (42 kDa, Protein from Influenza A virus (A/Moscow/10/1999(H3N2)))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of influenza virus neuraminidase antibody 1f04 (13 kDa, Protein from Homo sapiens)
- Light chain of influenza virus neuraminidase antibody 1f04 (11 kDa, Protein from Homo sapiens)
- Structure of 1f04 fab in complex with a/moscow/10/1999 (h3n2) influenza virus neuraminidase (Complex from Influenza A virus)
Structure of 3C08 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8ez8
Q-score: 0.571
Lei R, Kim W, Lv H, Mou Z, Scherm MJ, Schmitz AJ, Turner JS, Tan TJC, Wang Y, Ouyang WO, Liang W, Rivera-Cardona J, Teo C, Graham CS, Brooke CB, Presti RM, Mok CKP, Krammer F, Dai X, Ellebedy AH, Wu NC
Immunity (2023) 56 pp. 2621- [ DOI: doi:10.1016/j.immuni.2023.10.005 Pubmed: 37967533 ]
- Alpha-d-mannopyranose (180 Da, Ligand)
- Heavy chain of influenza virus neuraminidase antibody 3c08 (13 kDa, Protein from Homo sapiens)
- Neuraminidase (42 kDa, Protein from Influenza A virus (A/Moscow/10/1999(H3N2)))
- Light chain of influenza virus neuraminidase antibody 3c08 (11 kDa, Protein from Homo sapiens)
- Structure of 3c08 fab in complex with a/moscow/10/1999 (h3n2) influenza virus neuraminidase (Complex from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)