BG505 SOSIP.v5.2 in complex with the polyclonal Fab pAbC-1 from animal Rh.4O9
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7mdt
Q-score: 0.481
Antanasijevic A, Bowman CA, Kirchdoerfer RN, Cottrell CA, Ozorowski G, Upadhyay AA, Cirelli KM, Carnathan DG, Enemuo CA, Sewall LM, Nogal B, Zhao F, Groschel B, Schief WR, Sok D, Silvestri G, Crotty S, Bosinger SE, Ward AB
Sci Adv (2022) 8 pp. eabk2039-eabk2039 [ Pubmed: 35044813 DOI: doi:10.1126/sciadv.abk2039 ]
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Rh4o9.8 monoclonal antibody light chain (11 kDa, Protein from Macaca mulatta)
- Rh4o9.8 monoclonal antibody heavy chain (12 kDa, Protein from Macaca mulatta)
- Surface protein gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
- Bg505 sosip.v5.2 in complex with the polyclonal fab sample isolated from animal rh4o9. (Complex from Human immunodeficiency virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
BG505 SOSIP MD39 in complex with the monoclonal antibodies Rh.33104 mAb.1 and RM20A3
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7mdu
Q-score: 0.517
Antanasijevic A, Bowman CA, Kirchdoerfer RN, Cottrell CA, Ozorowski G, Upadhyay AA, Cirelli KM, Carnathan DG, Enemuo CA, Sewall LM, Nogal B, Zhao F, Groschel B, Schief WR, Sok D, Silvestri G, Crotty S, Bosinger SE, Ward AB
Sci Adv (2022) 8 pp. eabk2039-eabk2039 [ Pubmed: 35044813 DOI: doi:10.1126/sciadv.abk2039 ]
- Rh.33104 mab.1 heavy chain (12 kDa, Protein from Macaca mulatta)
- Rm20a3 mab light chain (11 kDa, Protein from Macaca mulatta)
- Rm20a3 mab heavy chain (13 kDa, Protein from Macaca mulatta)
- Surface protein gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
- Rh.33104 mab.1 light chain (11 kDa, Protein from Macaca mulatta)
- Bg505 sosip md39 in complex with the monoclonal antibodies rh.33104 mab.1 and rm20a3 (Complex from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
BG505 SOSIP.v5.2(7S) in complex with the monoclonal antibodies Rh.33172 mAb.1 and RM19R
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7mep
Q-score: 0.486
Antanasijevic A, Bowman CA, Kirchdoerfer RN, Cottrell CA, Ozorowski G, Upadhyay AA, Cirelli KM, Carnathan DG, Enemuo CA, Sewall LM, Nogal B, Zhao F, Groschel B, Schief WR, Sok D, Silvestri G, Crotty S, Bosinger SE, Ward AB
Sci Adv (2022) 8 pp. eabk2039-eabk2039 [ Pubmed: 35044813 DOI: doi:10.1126/sciadv.abk2039 ]
- Rm19r mab light chain (11 kDa, Protein from Macaca mulatta)
- Bg505 sosip.v5.2(7s) in complex with the monoclonal antibodies rh.33172 mab.1 and rm19r (Complex)
- Rm19r mab heavy chain (13 kDa, Protein from Macaca mulatta)
- Monoclonal antibodies rh.33172 mab.1 and rm19r (Complex from Macaca mulatta)
- Bg505 sosip.v5.2(7s) (Complex from Human immunodeficiency virus)
- Rh.33172 mab.1 heavy chain (14 kDa, Protein from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rh.33172 mab.1 light chain (11 kDa, Protein from Macaca mulatta)
- Bg505 sosipv5.2(7s) - gp120 (74 kDa, Protein from Human immunodeficiency virus)
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 6v0r
Q-score: 0.45
Nogal B, Bianchi M, Cottrell CA, Kirchdoerfer RN, Sewall LM, Turner HL, Zhao F, Sok D, Burton DR, Hangartner L, Ward AB
Cell Rep (2020) 30 pp. 3755-3765.e7 [ Pubmed: 32187547 DOI: doi:10.1016/j.celrep.2020.02.061 ]
Cryo-EM structure of porcine epidemic diarrhea virus (PEDV) spike protein
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6vv5
Q-score: 0.474
Kirchdoerfer RN, Bhandari M, Martini O, Sewall LM, Bangaru S, Yoon KJ, Ward AB
Structure (2021) 29 pp. 385-392.e5 [ Pubmed: 33378641 DOI: doi:10.1016/j.str.2020.12.003 ]
- Spike glycoprotein (148 kDa, Protein from Porcine epidemic diarrhea virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Palmitoleic acid (254 Da, Ligand)
- Porcine epidemic diarrhea virus spike protein (600 kDa, Complex from Porcine epidemic diarrhea virus)
MERS S0 trimer in complex with antibody G2
Resolution: 4.19 Å
EM Method: Single-particle
Fitted PDBs: 6pz8
Q-score: 0.133
Wang N, Rosen O, Wang L, Turner HL, Stevens LJ, Corbett KS, Bowman CA, Pallesen J, Shi W, Zhang Y, Leung K, Kirchdoerfer RN, Becker MM, Denison MR, Chappell JD, Ward AB, Graham BS, McLellan JS
Cell Rep (2019) 28 pp. 3395-3405.e6 [ Pubmed: 31553909 DOI: doi:10.1016/j.celrep.2019.08.052 ]
- G2 light chain (23 kDa, Protein from Mus musculus)
- Antibody g2 (Complex from Mus musculus)
- S protein (51 kDa, Protein from Middle East respiratory syndrome-related coronavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Mers s0 ectodomain trimer in complex with antibody g2 (Complex)
- G2 heavy chain (24 kDa, Protein from Mus musculus)
- Mers s0 ectodomain trimer (Complex from Middle East respiratory syndrome-related coronavirus)
- S protein (80 kDa, Protein from Middle East respiratory syndrome-related coronavirus)
SARS-Coronavirus NSP12 bound to NSP7 and NSP8 co-factors
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6nur
Q-score: 0.491
Nat Commun (2019) 10 pp. 2342-2342 [ Pubmed: 31138817 DOI: doi:10.1038/s41467-019-10280-3 ]
- Nsp12 (109 kDa, Protein from Human SARS coronavirus)
- Nsp8 (21 kDa, Protein from Human SARS coronavirus)
- Sars-coronavirus nsp12 bound to nsp7 and nsp8 co-factors (160 kDa, Complex from SARS coronavirus)
- Zinc ion (65 Da, Ligand)
- Nsp7 (9 kDa, Protein from Human SARS coronavirus)
SARS-Coronavirus NSP12 bound to NSP8 co-factor
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6nus
Q-score: 0.383
Nat Commun (2019) 10 pp. 2342-2342 [ Pubmed: 31138817 DOI: doi:10.1038/s41467-019-10280-3 ]
- Nsp12 (109 kDa, Protein from Human SARS coronavirus)
- Nsp8 (21 kDa, Protein from Human SARS coronavirus)
- Zinc ion (65 Da, Ligand)
- Sars-coronavirus nsp12 bound to nsp7 and nsp8 co-factors (130 kDa, Complex from SARS coronavirus)
Ebola virus nucleoprotein - RNA complex
Resolution: 3.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 6nut
Q-score: 0.516
Kirchdoerfer RN, Saphire EO, Ward AB
Acta Crystallogr F Struct Biol Commun (2019) 75 pp. 340-347 [ Pubmed: 31045563 DOI: doi:10.1107/S2053230X19004424 ]
- Nucleoprotein (50 kDa, Protein from Zaire ebolavirus (strain Mayinga-76))
- Rna (5'-r(p*ap*ap*ap*ap*ap*a)-3') (1 kDa, RNA from Homo sapiens)
- Ebola virus nucleoprotein bound to rna (177 MDa, Complex from Ebola virus - Mayinga, Zaire, 1976)
SARS Spike Glycoprotein, Stabilized variant, C3 symmetry
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6crv
Q-score: 0.466
Kirchdoerfer RN, Wang N, Pallesen J, Wrapp D, Turner HL, Cottrell CA, Corbett KS, Graham BS, McLellan JS, Ward AB
Sci Rep (2018) 8 pp. 15701-15701 [ Pubmed: 30356097 DOI: doi:10.1038/s41598-018-34171-7 ]
- Spike glycoprotein,fibritin (137 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars spike glycoprotein, stabilized ectodomain (540 kDa, Complex from SARS coronavirus)