Eastern equine encephalitis virus (PE-6) VLP in complex with full-length VLDLR (asymmetric unit)
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 8ufb
Q-score: 0.336
Adams LJ, Raju S, Ma H, Gilliland Jr T, Reed DS, Klimstra WB, Fremont DH, Diamond MS
Cell (2024) 187 pp. 360-374.e19 [ Pubmed: 38176410 DOI: doi:10.1016/j.cell.2023.11.031 ]
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Capsid protein (16 kDa, Protein from Eastern equine encephalitis virus)
- Calcium ion (40 Da, Ligand)
- E1 protein (47 kDa, Protein from Eastern equine encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- E2 protein (46 kDa, Protein from Eastern equine encephalitis virus)
- Isoform short of very low-density lipoprotein receptor (82 kDa, Protein from Homo sapiens)
Eastern equine encephalitis virus (PE-6) VLP in complex with VLDLR LA(1-2) (asymmetric unit)
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8ufc
Q-score: 0.495
Adams LJ, Raju S, Ma H, Gilliland Jr T, Reed DS, Klimstra WB, Fremont DH, Diamond MS
Cell (2024) 187 pp. 360-374.e19 [ Pubmed: 38176410 DOI: doi:10.1016/j.cell.2023.11.031 ]
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Capsid protein (16 kDa, Protein from Eastern equine encephalitis virus)
- Very low-density lipoprotein receptor (8 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- E1 protein (47 kDa, Protein from Eastern equine encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- E2 protein (46 kDa, Protein from Eastern equine encephalitis virus)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7sfv
Q-score: 0.324
Kafai NM, Williamson LE, Binshtein E, Sukupolvi-Petty S, Gardner CL, Liu J, Mackin S, Kim AS, Kose N, Carnahan RH, Jung A, Droit L, Reed DS, Handley SA, Klimstra WB, Crowe JE, Diamond MS
J Exp Med (2022) 219 [ DOI: doi:10.1084/jem.20212532 Pubmed: 35297953 ]
- Hveev-63 fab light chain (22 kDa, Protein from Homo sapiens)
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (46 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hveev-63 fab heavy chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Capsid protein (17 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7sfw
Q-score: 0.508
Kafai NM, Williamson LE, Binshtein E, Sukupolvi-Petty S, Gardner CL, Liu J, Mackin S, Kim AS, Kose N, Carnahan RH, Jung A, Droit L, Reed DS, Handley SA, Klimstra WB, Crowe JE, Diamond MS
J Exp Med (2022) 219 [ DOI: doi:10.1084/jem.20212532 Pubmed: 35297953 ]
- Hveev-63 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Hveev-63 fab light chain (11 kDa, Protein from Homo sapiens)
CryoEM structure of Eastern Equine Encephalitis (EEEV) VLP with Fab EEEV-143.
Resolution: 8.5 Å
EM Method: Single-particle
Fitted PDBs: 6xob
Q-score: 0.182
Williamson LE, Gilliland Jr T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RE, Durie CL, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox JM, Diamond MS, Ohi MD, Klimstra WB, Crowe Jr JE
Cell (2020) 183 pp. 1884-1900.e23 [ Pubmed: 33301709 DOI: doi:10.1016/j.cell.2020.11.011 ]
- Togavirin (47 kDa, Protein from Eastern equine encephalitis virus)
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Togavirin (29 kDa, Protein from Eastern equine encephalitis virus)
- Eeev-143 fab light chain (23 kDa, Protein from Homo sapiens)
- Togavirin (47 kDa, Protein from Eastern equine encephalitis virus)
- Eeev-143 fab heavy chain (23 kDa, Protein from Homo sapiens)