Eastern equine encephalitis virus (PE-6) VLP in complex with full-length VLDLR (asymmetric unit)
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 8ufb
Q-score: 0.336
Adams LJ, Raju S, Ma H, Gilliland Jr T, Reed DS, Klimstra WB, Fremont DH, Diamond MS
Cell (2024) 187 pp. 360-374.e19 [ Pubmed: 38176410 DOI: doi:10.1016/j.cell.2023.11.031 ]
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Capsid protein (16 kDa, Protein from Eastern equine encephalitis virus)
- Calcium ion (40 Da, Ligand)
- E1 protein (47 kDa, Protein from Eastern equine encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- E2 protein (46 kDa, Protein from Eastern equine encephalitis virus)
- Isoform short of very low-density lipoprotein receptor (82 kDa, Protein from Homo sapiens)
Eastern equine encephalitis virus (PE-6) VLP in complex with VLDLR LA(1-2) (asymmetric unit)
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8ufc
Q-score: 0.495
Adams LJ, Raju S, Ma H, Gilliland Jr T, Reed DS, Klimstra WB, Fremont DH, Diamond MS
Cell (2024) 187 pp. 360-374.e19 [ Pubmed: 38176410 DOI: doi:10.1016/j.cell.2023.11.031 ]
- Capsid protein (16 kDa, Protein from Eastern equine encephalitis virus)
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Calcium ion (40 Da, Ligand)
- Very low-density lipoprotein receptor (8 kDa, Protein from Homo sapiens)
- E1 protein (47 kDa, Protein from Eastern equine encephalitis virus)
- E2 protein (46 kDa, Protein from Eastern equine encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7sfv
Q-score: 0.324
Kafai NM, Williamson LE, Binshtein E, Sukupolvi-Petty S, Gardner CL, Liu J, Mackin S, Kim AS, Kose N, Carnahan RH, Jung A, Droit L, Reed DS, Handley SA, Klimstra WB, Crowe JE, Diamond MS
J Exp Med (2022) 219 [ DOI: doi:10.1084/jem.20212532 Pubmed: 35297953 ]
- Hveev-63 fab light chain (22 kDa, Protein from Homo sapiens)
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (46 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hveev-63 fab heavy chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Capsid protein (17 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7sfw
Q-score: 0.508
Kafai NM, Williamson LE, Binshtein E, Sukupolvi-Petty S, Gardner CL, Liu J, Mackin S, Kim AS, Kose N, Carnahan RH, Jung A, Droit L, Reed DS, Handley SA, Klimstra WB, Crowe JE, Diamond MS
J Exp Med (2022) 219 [ DOI: doi:10.1084/jem.20212532 Pubmed: 35297953 ]
- Hveev-63 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Hveev-63 fab light chain (11 kDa, Protein from Homo sapiens)